Gene detail

Detailed information of evm.model.Ap8.201 in Astrangia poculata

Genomic Location: Ap8:1904825...1914074
NR annotation: XP_020628292.1, uncharacterized protein LOC110065485 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.201

atggatagacgacaaccctttgtgaataacaatccagctgggataaaccttttgcaattgcctgtaattggaaatgcactggggaatccgcaacaattcctgaatagtttgcgtggattaggaataccacaagcacaaggacaacaaaacatgaatcgagaaccattttgccaagacaattattacgatagttattacggcagagaacaaatagcatctagtgaccgtggacagaggacactccgagaaccccgtgacagtcgtgacctagaaagaggagattatcgccctgatgatcgtagtaggattcgtggactcatggataaagaaattccattaggcttttcattcgcagagatggagtcttcaaggcacaatgaaagatatgggaaagaggattttgacagaggaaggaactcacaatcagcgtcctttagatcacagtctgagagtgaccgtgttgatagtttgtttggcaagggcaaaggtttggaacttagtctaagtgaaagcaagtatggcaggagaagcaatacaggtgttccttggaatgcacaactacgtccaaactgctaccttgtacctccacttgatgaaacgcatgtattaccgttgagtgaaaaacaacctggttgtcgcacaatttttgtaggttcccttcctgcgctgactgatgaattcattgtgagggaaatattcaatgtttgtggacccattgagaacatcagtttcaaaaatgctagaaaaaattcccaagttagatactgccaagtgacattctacaagcatgattctgttgagggggcagtcaaatttaatggacatgtactggtaattggggacggaagtgacagaaaaaccaaaatcagtcgcattcgtgttaattacgaccaagaaacaaaggataataataagaaggcaactaaagtggtaaatacacaaaagccagctcaggaggaagaagaaaaggaactgagaatatatgatcgtaagactgcattccaactcctggatctgcttcgccacgattcttctgtagttgagtccttggaggtgatggctcattggtttgaaaagggtgaatgtaatcgctccacagtaaatgtgtttcacacaattctcagcaccatccacggttttgtcaaacgattgattggcaaacgaaaagagcatgatcgacaagtggagaagcagaagaaggaggcattagacaaagccaatgaaatcaaacaacaatgtgaagctgtatggaaggtatttgagtcagccaccaaacagaagtcttgggaccattttaccaagggacaaagaaaaaccatttctcagtggcatgctttgatcaaaaatgaaatcaaatcagcccaagaggctgagatccaaaatcgcgaggaggtaggtatggagttggatgatgaggtgccaaccctcggtggtcttattgagcagccagcactccaagtagcagcagaacatcaacatgttcagcaagatgaaagtcagtctcctccaaaggccaagaaaccacgacgtgatgcatcaggatttgaaaattatgacatggccattttcaatgccattgataattataaggaggcaacgtggctgagtgaatctgatgcagcctcaactgatgctctcaagttagagaatgaaaagctacgcacacaagttgaaagcttgaaggggattgctgagcaaaacagcaacctagtgtggtccatgcaaagctaccagtaccaagctgatctgaccaggcaacagtatggtgacaggctgaaagagaaagatcacgagattctacgtctgcagaaagctttacagcacataaagcagaacgtaaaagacaaaaagctactcagtgatctagagagagcaacatctgagcaaccaactgatctgcaaattgtggtggagttgggtaataatgatcaaacgacaacaaatgaagtagcaatgagacacgaagatagcaaggaaaatgatggagaagatattaaagaggaaataatggaagatgactttgagagaaaagttgaacagattacaggacacgacaacgaagttgaagaggaaaagactggcgaagaacacggtggaaacgaagcaggcagtggagtgtattctgaacaaggagacgtaagcaataaaggagaaagttccctaccaagtcaaactaaacagcagaagaatgttgaagaaggtgatttccagtgtgaaggtgttcttattcaaggggaaaacgaggaattggcagaaagatcgaatgacgagagcaacacacttggtgcaccagtgacggaagaagagaaacttacagaagaaggaagagcgcaattggcagacgaagaagaggggattccagcagaggaaggagagaagccaatagaagaagaagataaaacagaggatggagagaagccagtaaaagaagacaggacagtggaaggagagaagcccacagaggaattggagatccaagcaggaacagaacaggaagagaagccaagagaagaagaagagaacctagcagaggaagcagaagacgaggaggaaggatgtggccgttttgtacagatagatgacgaacagtttgaagtgattgacgacatggatgaagacagtgaggatgattataaagaagtagccgctcagaagcctgtgaatgaaagtgttgcgaaaatgaatgagcagcttccaggcaaagatgattataaagaagaagccgctcccagtactttgaatgaaaatgttgagcaaatgaatcagcagctaccaggcaaagatgattataaagaagtagccgctcatgatcccttgaatggaagtgttgagcaagcgaacgagcagcttccaagcgaagatgattataaagaagtggctgctcacgatcctttgaatgaaagtgttgagcaagtcaacgagcagcttcccgcttattggtcattttaccagcaggattacagtgcccagtatcaaacgtggcccacatctggaatggccggttatggatccatggattttggacccaacctggtgcgcctctctggcgaggagcttgtgctcgttggcataatttgttcgtaccttcagctgtgtccttctggtgccacgagtggggagatacgagattacttgtcaaggcagttcaatgagcgcaggaaagatgtagtcgagaaattgctgttcaatttgcctgttctattcagaacaggggaatcaagtgggaacacaaaatggaagttttgcggatttgagatgtttcagtcgaagagtgagcagtaa

Transcript

evm.model.Ap8.201

ATGGATAGACGACAACCCTTTGTGAATAACAATCCAGCTGGGATAAACCTTTTGCAATTGCCTGTAATTGGAAATGCACTGGGGAATCCGCAACAATTCCTGAATAGTTTGCGTGGATTAGGAATACCACAAGCACAAGGACAACAAAACATGAATCGAGAACCATTTTGCCAAGACAATTATTACGATAGTTATTACGGCAGAGAACAAATAGCATCTAGTGACCGTGGACAGAGGACACTCCGAGAACCCCGTGACAGTCGTGACCTAGAAAGAGGAGATTATCGCCCTGATGATCGTAGTAGGATTCGTGGACTCATGGATAAAGAAATTCCATTAGGCTTTTCATTCGCAGAGATGGAGTCTTCAAGGCACAATGAAAGATATGGGAAAGAGGATTTTGACAGAGGAAGGAACTCACAATCAGCGTCCTTTAGATCACAGTCTGAGAGTGACCGTGTTGATAGTTTGTTTGGCAAGGGCAAAGGTTTGGAACTTAGTCTAAGTGAAAGCAAGTATGGCAGGAGAAGCAATACAGGTGTTCCTTGGAATGCACAACTACGTCCAAACTGCTACCTTGTACCTCCACTTGATGAAACGCATGTATTACCGTTGAGTGAAAAACAACCTGGTTGTCGCACAATTTTTGTAGGTTCCCTTCCTGCGCTGACTGATGAATTCATTGTGAGGGAAATATTCAATGTTTGTGGACCCATTGAGAACATCAGTTTCAAAAATGCTAGAAAAAATTCCCAAGTTAGATACTGCCAAGTGACATTCTACAAGCATGATTCTGTTGAGGGGGCAGTCAAATTTAATGGACATGTACTGGTAATTGGGGACGGAAGTGACAGAAAAACCAAAATCAGTCGCATTCGTGTTAATTACGACCAAGAAACAAAGGATAATAATAAGAAGGCAACTAAAGTGGTAAATACACAAAAGCCAGCTCAGGAGGAAGAAGAAAAGGAACTGAGAATATATGATCGTAAGACTGCATTCCAACTCCTGGATCTGCTTCGCCACGATTCTTCTGTAGTTGAGTCCTTGGAGGTGATGGCTCATTGGTTTGAAAAGGGTGAATGTAATCGCTCCACAGTAAATGTGTTTCACACAATTCTCAGCACCATCCACGGTTTTGTCAAACGATTGATTGGCAAACGAAAAGAGCATGATCGACAAGTGGAGAAGCAGAAGAAGGAGGCATTAGACAAAGCCAATGAAATCAAACAACAATGTGAAGCTGTATGGAAGGTATTTGAGTCAGCCACCAAACAGAAGTCTTGGGACCATTTTACCAAGGGACAAAGAAAAACCATTTCTCAGTGGCATGCTTTGATCAAAAATGAAATCAAATCAGCCCAAGAGGCTGAGATCCAAAATCGCGAGGAGGTAGGTATGGAGTTGGATGATGAGGTGCCAACCCTCGGTGGTCTTATTGAGCAGCCAGCACTCCAAGTAGCAGCAGAACATCAACATGTTCAGCAAGATGAAAGTCAGTCTCCTCCAAAGGCCAAGAAACCACGACGTGATGCATCAGGATTTGAAAATTATGACATGGCCATTTTCAATGCCATTGATAATTATAAGGAGGCAACGTGGCTGAGTGAATCTGATGCAGCCTCAACTGATGCTCTCAAGTTAGAGAATGAAAAGCTACGCACACAAGTTGAAAGCTTGAAGGGGATTGCTGAGCAAAACAGCAACCTAGTGTGGTCCATGCAAAGCTACCAGTACCAAGCTGATCTGACCAGGCAACAGTATGGTGACAGGCTGAAAGAGAAAGATCACGAGATTCTACGTCTGCAGAAAGCTTTACAGCACATAAAGCAGAACGTAAAAGACAAAAAGCTACTCAGTGATCTAGAGAGAGCAACATCTGAGCAACCAACTGATCTGCAAATTGTGGTGGAGTTGGGTAATAATGATCAAACGACAACAAATGAAGTAGCAATGAGACACGAAGATAGCAAGGAAAATGATGGAGAAGATATTAAAGAGGAAATAATGGAAGATGACTTTGAGAGAAAAGTTGAACAGATTACAGGACACGACAACGAAGTTGAAGAGGAAAAGACTGGCGAAGAACACGGTGGAAACGAAGCAGGCAGTGGAGTGTATTCTGAACAAGGAGACGTAAGCAATAAAGGAGAAAGTTCCCTACCAAGTCAAACTAAACAGCAGAAGAATGTTGAAGAAGGTGATTTCCAGTGTGAAGGTGTTCTTATTCAAGGGGAAAACGAGGAATTGGCAGAAAGATCGAATGACGAGAGCAACACACTTGGTGCACCAGTGACGGAAGAAGAGAAACTTACAGAAGAAGGAAGAGCGCAATTGGCAGACGAAGAAGAGGGGATTCCAGCAGAGGAAGGAGAGAAGCCAATAGAAGAAGAAGATAAAACAGAGGATGGAGAGAAGCCAGTAAAAGAAGACAGGACAGTGGAAGGAGAGAAGCCCACAGAGGAATTGGAGATCCAAGCAGGAACAGAACAGGAAGAGAAGCCAAGAGAAGAAGAAGAGAACCTAGCAGAGGAAGCAGAAGACGAGGAGGAAGGATGTGGCCGTTTTGTACAGATAGATGACGAACAGTTTGAAGTGATTGACGACATGGATGAAGACAGTGAGGATGATTATAAAGAAGTAGCCGCTCAGAAGCCTGTGAATGAAAGTGTTGCGAAAATGAATGAGCAGCTTCCAGGCAAAGATGATTATAAAGAAGAAGCCGCTCCCAGTACTTTGAATGAAAATGTTGAGCAAATGAATCAGCAGCTACCAGGCAAAGATGATTATAAAGAAGTAGCCGCTCATGATCCCTTGAATGGAAGTGTTGAGCAAGCGAACGAGCAGCTTCCAAGCGAAGATGATTATAAAGAAGTGGCTGCTCACGATCCTTTGAATGAAAGTGTTGAGCAAGTCAACGAGCAGCTTCCCGCTTATTGGTCATTTTACCAGCAGGATTACAGTGCCCAGTATCAAACGTGGCCCACATCTGGAATGGCCGGTTATGGATCCATGGATTTTGGACCCAACCTGGTGCGCCTCTCTGGCGAGGAGCTTGTGCTCGTTGGCATAATTTGTTCGTACCTTCAGCTGTGTCCTTCTGGTGCCACGAGTGGGGAGATACGAGATTACTTGTCAAGGCAGTTCAATGAGCGCAGGAAAGATGTAGTCGAGAAATTGCTGTTCAATTTGCCTGTTCTATTCAGAACAGGGGAATCAAGTGGGAACACAAAATGGAAGTTTTGCGGATTTGAGATGTTTCAGTCGAAGAGTGAGCAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005879 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR038876 all species →	Family	Ecto-NOX disulfide-thiol exchanger	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16001 all species →	ECTO-NOX DISULFIDE-THIOL EXCHANGER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007624 all species →	Biological Process	ultradian rhythm	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24982	ENOX; ecto-NOX disulfide-thiol exchanger	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.