Gene detail

Detailed information of evm.model.Ap8.2055 in Astrangia poculata

Genomic Location: Ap8:22686546...22696201
NR annotation: XP_020621562.1, polycystic kidney disease protein 1-like 2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2055

atgcccgaccacagaggatcagaaattcccaaaattgttgtccctggatccgttgtcctggaacatgatgataacgtcacaataacctgcaacataactgatagaggtaaccctgccctaacaagaacgaagaggatatcatggttaaaaaatggagtggtcttgtatagtaagacagatctgattgacccagtctttcccctcgttcgagaaaaaggttttgaaagtgatgacgggaattacacttgtgttcttgaggtgttgttgcgatatggaaaaccgtacaatgtgacagattacaccttcatcaaagtgaaagcccgaccactgaagtgctatagttgtctcggctcaggccaaaaatgccgcgatgaagtggtattcaaaaacagcagcgcccaagttgtttgtaaaggatacgaggaccgatgtttttggagttaccatagagtaaacagtagcatggaagattttgtgatgggatgcaatactaaacaaaactgcgaaaagctacggaaaagttgtatggaagcgatgagctctaatttactagaatgctgtgatacctcctgttgcaactctgacttttgcaacaaacttagctatgcagatggaagactgtgtaaaaggcgacaaaacctggtggcgatcatctacggagggaccgaagtcatccgaggattgaccgaaaacattacgatgaacggctcgctatcctatgaccccgaaactggtgacaaaaaagggatgaactttacttggcgttacggcagcataccaagaaacaacaagtcttgtcttcagttgctgaagcggggctcgtttccaccagtaaatttatcagccatacaaaatgaaaaggttagctttggtcgcaccatttcgatcaacactaatgcgacaaacggcagtgagacatttgttttcactttgatggtagccaaaggttatcgcactgcaagcgcgattcaagttgttcatcttgttaaaggagatccacccagaatatatcaaagatgcctgataaattgtggtccaaaattagttccttctgtcaaattgagcattgaaacaatgtgccaaggctcacagtgctcaaacataacatcctacaactggatgttctaccaaggtgaccagtccaatcctattgtatggcaaaaaggaaataatttacatttgatagcaagcacaccacttaattcaagcagaattgttataaaggagagttcactcgccggaggcaaaaactaccgattggcagtacttgttacaaatgcacttggctttgctggaataagtgcatacgacttttcaacatcactgcccccagagagaggaacgtgtaccatagaaccttcatcaggtatttcattaaggacctacttccatctgagttgcagtggctggactagttacaactttcccctgtcctaccagttccgatatcaacttaacaacgggttgaccaatgtggtatatcatggcttaaatacctcagttgtttctctgttgcaatctggagacatggcaaataacttcacattgaattttactgtaactatgactgatagcaacggtgcctctacgacatacgtaaacttgtctgttcaggttaggccattcaaggacgtcactcctaacaccattcaaagtcatctggacgatttagaccaaatggatgaccttaacagagcggttcaaattgcaaataccattttggaagcaatttccagacattccagtttgaaccggatcgaaaaaacaaagactaaagaattgatcgtgcagaaggttgctacctttcacgtgaaaaaccttccagatcttttgcaaagttcctccgtacttggttctgccacacaagatacagaaactgtgtctgaaaagaccttggtcacttcactatctgcgatcgactcaatgacgtcactcttgatgtccaaagcgaaagctaagaatgccgttgatataccattgatttcaaagtctgctgagaacctgggctcctgtctgaacaacatgttaaacgttggtgcagtgattgcttctagaaacttagattctagtcagggtagacatgtggttaaacgctgcatgcaccttgcaagcactgtgagtgatgcggtactagagacaagactcccggatgaagaagttatctccattcagacaagtggtatggcctttatgttaggacgtcatacaccttcgaaacttgctggactaaagattgaaagtgacaatggccaaattcgttttaccagcaggagcaatgttctggtctcccgtgtcgccaacaatattttgtggaactaa

Transcript

evm.model.Ap8.2055

ATGCCCGACCACAGAGGATCAGAAATTCCCAAAATTGTTGTCCCTGGATCCGTTGTCCTGGAACATGATGATAACGTCACAATAACCTGCAACATAACTGATAGAGGTAACCCTGCCCTAACAAGAACGAAGAGGATATCATGGTTAAAAAATGGAGTGGTCTTGTATAGTAAGACAGATCTGATTGACCCAGTCTTTCCCCTCGTTCGAGAAAAAGGTTTTGAAAGTGATGACGGGAATTACACTTGTGTTCTTGAGGTGTTGTTGCGATATGGAAAACCGTACAATGTGACAGATTACACCTTCATCAAAGTGAAAGCCCGACCACTGAAGTGCTATAGTTGTCTCGGCTCAGGCCAAAAATGCCGCGATGAAGTGGTATTCAAAAACAGCAGCGCCCAAGTTGTTTGTAAAGGATACGAGGACCGATGTTTTTGGAGTTACCATAGAGTAAACAGTAGCATGGAAGATTTTGTGATGGGATGCAATACTAAACAAAACTGCGAAAAGCTACGGAAAAGTTGTATGGAAGCGATGAGCTCTAATTTACTAGAATGCTGTGATACCTCCTGTTGCAACTCTGACTTTTGCAACAAACTTAGCTATGCAGATGGAAGACTGTGTAAAAGGCGACAAAACCTGGTGGCGATCATCTACGGAGGGACCGAAGTCATCCGAGGATTGACCGAAAACATTACGATGAACGGCTCGCTATCCTATGACCCCGAAACTGGTGACAAAAAAGGGATGAACTTTACTTGGCGTTACGGCAGCATACCAAGAAACAACAAGTCTTGTCTTCAGTTGCTGAAGCGGGGCTCGTTTCCACCAGTAAATTTATCAGCCATACAAAATGAAAAGGTTAGCTTTGGTCGCACCATTTCGATCAACACTAATGCGACAAACGGCAGTGAGACATTTGTTTTCACTTTGATGGTAGCCAAAGGTTATCGCACTGCAAGCGCGATTCAAGTTGTTCATCTTGTTAAAGGAGATCCACCCAGAATATATCAAAGATGCCTGATAAATTGTGGTCCAAAATTAGTTCCTTCTGTCAAATTGAGCATTGAAACAATGTGCCAAGGCTCACAGTGCTCAAACATAACATCCTACAACTGGATGTTCTACCAAGGTGACCAGTCCAATCCTATTGTATGGCAAAAAGGAAATAATTTACATTTGATAGCAAGCACACCACTTAATTCAAGCAGAATTGTTATAAAGGAGAGTTCACTCGCCGGAGGCAAAAACTACCGATTGGCAGTACTTGTTACAAATGCACTTGGCTTTGCTGGAATAAGTGCATACGACTTTTCAACATCACTGCCCCCAGAGAGAGGAACGTGTACCATAGAACCTTCATCAGGTATTTCATTAAGGACCTACTTCCATCTGAGTTGCAGTGGCTGGACTAGTTACAACTTTCCCCTGTCCTACCAGTTCCGATATCAACTTAACAACGGGTTGACCAATGTGGTATATCATGGCTTAAATACCTCAGTTGTTTCTCTGTTGCAATCTGGAGACATGGCAAATAACTTCACATTGAATTTTACTGTAACTATGACTGATAGCAACGGTGCCTCTACGACATACGTAAACTTGTCTGTTCAGGTTAGGCCATTCAAGGACGTCACTCCTAACACCATTCAAAGTCATCTGGACGATTTAGACCAAATGGATGACCTTAACAGAGCGGTTCAAATTGCAAATACCATTTTGGAAGCAATTTCCAGACATTCCAGTTTGAACCGGATCGAAAAAACAAAGACTAAAGAATTGATCGTGCAGAAGGTTGCTACCTTTCACGTGAAAAACCTTCCAGATCTTTTGCAAAGTTCCTCCGTACTTGGTTCTGCCACACAAGATACAGAAACTGTGTCTGAAAAGACCTTGGTCACTTCACTATCTGCGATCGACTCAATGACGTCACTCTTGATGTCCAAAGCGAAAGCTAAGAATGCCGTTGATATACCATTGATTTCAAAGTCTGCTGAGAACCTGGGCTCCTGTCTGAACAACATGTTAAACGTTGGTGCAGTGATTGCTTCTAGAAACTTAGATTCTAGTCAGGGTAGACATGTGGTTAAACGCTGCATGCACCTTGCAAGCACTGTGAGTGATGCGGTACTAGAGACAAGACTCCCGGATGAAGAAGTTATCTCCATTCAGACAAGTGGTATGGCCTTTATGTTAGGACGTCATACACCTTCGAAACTTGCTGGACTAAAGATTGAAAGTGACAATGGCCAAATTCGTTTTACCAGCAGGAGCAATGTTCTGGTCTCCCGTGTCGCCAACAATATTTTGTGGAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q26627	Sperm receptor for egg jelly OS=Strongylocentrotus purpuratus OX=7668 GN=REJ PE=1 SV=1
Q9Z0T6	Polycystin family receptor for egg jelly OS=Mus musculus OX=10090 GN=Pkdrej PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001146 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02010 all species →	REJ	REJ domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014010 all species →	Domain	REJ domain	Interproscan
IPR045860 all species →	Homologous_superfamily	Snake toxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46730 all species →	POLYCYSTIN-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23593	A2ML; alpha-2-macroglobulin-like protein	-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.