Gene detail

Detailed information of evm.model.Ap8.2074_evm.model.Ap8.2080 in Astrangia poculata

Genomic Location: Ap8:22825098...22917327
NR annotation: XP_020623304.1, muscle, skeletal receptor tyrosine-protein kinase-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2074_evm.model.Ap8.2080

atggatttcaaatatatcctagtgatcttgtttagttacgtgtcagccctcgcttctacatcagcgacggtgaacaactgttctgctgtaccgttcaatgtgacgctggtgtcctgtggacaacacaacaccacaagagatcaatgcctgggttggggatgctgttggaattcatcttcttccgtaaatgctacacggtgttatggcatagcaaataatcagtccgtcagcaactcaacacacacaacaagtgttcccatgacaaccgaaaagacgacaagtaccagcggatctctttcgaccacagctggtccggagggcacgtgccaggtgtatcgtggtcaggtgtgtgacacgtggttgaacatcactatgttggaagaccgctggaaaccgagatttattgacaacagattcggactgaatggaacggaaggagcgattatggagttcatgtacgccatcaaccgaatagacggtcaggaaaggtgtaagagaatcttaaagcctattctctgcgagtactttcttccgccgtgtaacgaaaacaacgagcggtacagttattgtaaagaagattgtgaagctgtttttcagacgtgcaactcggccatgcgagaaataatgggagctgcaaagtacattattgaaaagctacgaatggagttcgctcacgttggagtgcccaactgtactaaactgcgttattctgctgacttcaaagcggagaataccacgtgcattcattttggattatttggctttaccacagcggaaccatcggtttacgatagagactctgaaaacagaatcaactctacagcaattattctgagcatcatgggcgtatttatcctattctgcattggtatcgtcatccgttttcacaggaggcgtgtttcagctaaaagagacgatgttacgcatgaagcagcagaaaactgggcactagaaggaactgccttcagttgggagatcccatcacaacaaatcgatctacaaagtgtgctagggagcggcacatttggggaagtgtggaaagctgttatcttgacattaaatggaattccagggcagaccattgctgctgtgaaaaagctgaaacacaacagctctcagtcagaaaaggaatctcttgcacaagaaatagagttggggaggtcgttgaaaggggacagacatccaaacattgtgaacttcctgggatgcgtttctacctcagaggctccattgatgctggttcttgaatatgcaccatacggggatttacttggctatctaagaaaaagccggggactagaagacaagtactactgctactcagagagctgtccagaggaagtgacgtcatacgatctgctctcttttgcccagcagattgcctcgggcatgagtttccttgcgtccaaaaaaatacttcaccgcgatcttgccgccagaaatatactagttggtgtagacaggacctgtaaaatcacagactttggacttgcgcttgtgagagagaaacatcagtatctttactgcactgccatcagaaagggtcgacttccaatcaaatggacagcaccagaacatttgttcaatgacgctgacgagaataatgtccgagtgtccgagaaaagtgacgtatggtcttatggcatcgttctgtatgagatctttacactaggaggccttccctaccccggttggggtgagtggaaagtagtgtacgagctgaaggtcaacaagtaccgaatggatcaaccagatcatgtcagcaatgaactgtaccgaatcatggtcgattgttggcttgagaacccggatgatcgtccttcctttgaacttcttcacgaagaaacaactggattattgcaagaagagcactatcttgacttggacatgtccaagtacgaggctcatctatacacagatgtggaagaactagatgctgccatgggccatgaacactcgttggagactcgaggaccttccgaggaaattgacaccacgccagcagaacactag

Transcript

evm.model.Ap8.2074_evm.model.Ap8.2080

ATGGATTTCAAATATATCCTAGTGATCTTGTTTAGTTACGTGTCAGCCCTCGCTTCTACATCAGCGACGGTGAACAACTGTTCTGCTGTACCGTTCAATGTGACGCTGGTGTCCTGTGGACAACACAACACCACAAGAGATCAATGCCTGGGTTGGGGATGCTGTTGGAATTCATCTTCTTCCGTAAATGCTACACGGTGTTATGGCATAGCAAATAATCAGTCCGTCAGCAACTCAACACACACAACAAGTGTTCCCATGACAACCGAAAAGACGACAAGTACCAGCGGATCTCTTTCGACCACAGCTGGTCCGGAGGGCACGTGCCAGGTGTATCGTGGTCAGGTGTGTGACACGTGGTTGAACATCACTATGTTGGAAGACCGCTGGAAACCGAGATTTATTGACAACAGATTCGGACTGAATGGAACGGAAGGAGCGATTATGGAGTTCATGTACGCCATCAACCGAATAGACGGTCAGGAAAGGTGTAAGAGAATCTTAAAGCCTATTCTCTGCGAGTACTTTCTTCCGCCGTGTAACGAAAACAACGAGCGGTACAGTTATTGTAAAGAAGATTGTGAAGCTGTTTTTCAGACGTGCAACTCGGCCATGCGAGAAATAATGGGAGCTGCAAAGTACATTATTGAAAAGCTACGAATGGAGTTCGCTCACGTTGGAGTGCCCAACTGTACTAAACTGCGTTATTCTGCTGACTTCAAAGCGGAGAATACCACGTGCATTCATTTTGGATTATTTGGCTTTACCACAGCGGAACCATCGGTTTACGATAGAGACTCTGAAAACAGAATCAACTCTACAGCAATTATTCTGAGCATCATGGGCGTATTTATCCTATTCTGCATTGGTATCGTCATCCGTTTTCACAGGAGGCGTGTTTCAGCTAAAAGAGACGATGTTACGCATGAAGCAGCAGAAAACTGGGCACTAGAAGGAACTGCCTTCAGTTGGGAGATCCCATCACAACAAATCGATCTACAAAGTGTGCTAGGGAGCGGCACATTTGGGGAAGTGTGGAAAGCTGTTATCTTGACATTAAATGGAATTCCAGGGCAGACCATTGCTGCTGTGAAAAAGCTGAAACACAACAGCTCTCAGTCAGAAAAGGAATCTCTTGCACAAGAAATAGAGTTGGGGAGGTCGTTGAAAGGGGACAGACATCCAAACATTGTGAACTTCCTGGGATGCGTTTCTACCTCAGAGGCTCCATTGATGCTGGTTCTTGAATATGCACCATACGGGGATTTACTTGGCTATCTAAGAAAAAGCCGGGGACTAGAAGACAAGTACTACTGCTACTCAGAGAGCTGTCCAGAGGAAGTGACGTCATACGATCTGCTCTCTTTTGCCCAGCAGATTGCCTCGGGCATGAGTTTCCTTGCGTCCAAAAAAATACTTCACCGCGATCTTGCCGCCAGAAATATACTAGTTGGTGTAGACAGGACCTGTAAAATCACAGACTTTGGACTTGCGCTTGTGAGAGAGAAACATCAGTATCTTTACTGCACTGCCATCAGAAAGGGTCGACTTCCAATCAAATGGACAGCACCAGAACATTTGTTCAATGACGCTGACGAGAATAATGTCCGAGTGTCCGAGAAAAGTGACGTATGGTCTTATGGCATCGTTCTGTATGAGATCTTTACACTAGGAGGCCTTCCCTACCCCGGTTGGGGTGAGTGGAAAGTAGTGTACGAGCTGAAGGTCAACAAGTACCGAATGGATCAACCAGATCATGTCAGCAATGAACTGTACCGAATCATGGTCGATTGTTGGCTTGAGAACCCGGATGATCGTCCTTCCTTTGAACTTCTTCACGAAGAAACAACTGGATTATTGCAAGAAGAGCACTATCTTGACTTGGACATGTCCAAGTACGAGGCTCATCTATACACAGATGTGGAAGAACTAGATGCTGCCATGGGCCATGAACACTCGTTGGAGACTCGAGGACCTTCCGAGGAAATTGACACCACGCCAGCAGAACACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3V9H8	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Rattus norvegicus OX=10116 GN=Ret PE=1 SV=1
P35546	Proto-oncogene tyrosine-protein kinase receptor Ret OS=Mus musculus OX=10090 GN=Ret PE=1 SV=2
P11362	Fibroblast growth factor receptor 1 OS=Homo sapiens OX=9606 GN=FGFR1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000023 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.2074_evm.model.Ap8.2080.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.