Gene detail

Detailed information of evm.model.Ap8.219 in Astrangia poculata

Genomic Location: Ap8:2139264...2153186
NR annotation: XP_027048689.1, cullin-3-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.219

atgagtatgcgatccgggaagaaagacacaaagatgaggattcgggcttttccgatgactatggatgacaagtatgttgaagatatctggaatttactgaagaatgccattcaggagattcagaaaaagaacaatagtggcctgagttttgaagaattgtacagaaatgcgtacactatggtgttgcacaagcatggagagaggctatactctggactcaagcaagttgttacagaacatttggtagaaaagatacgcaaagatgtagtgatttcactcaacaataatttcctggacacattgaatgctgcttggaatgatcatcaaacatcaatggtgatgataagagatattctcatgtacatggacagagtatatgttcaacaaaatggcgttgataatgtttacaacttaggattaattcttttcagggacttggtggtgaggtatggtaacataagagatcatctttgtcaaacattactgacgcttgtcagaagagagcgtaagggagaagttgttgacaggatggccatcagaaatgcttgtcagatgttgatgatattgggtattgacactagaagtgtttatgaagaggactttgagaagcctttccttgaagagtctgcagaattctacaaattagaaggtcaaaagttccttgcagaaaacagtgcatcagtatatatccagaaggttgaagccagaataaatgaagaatcagaacgggccaagcattacctggatcccaccactgaggaccctattgttaagggatccctcaacgaagcgattgaaaaagccgcctctgctgccgctcaagctgctgtcagcgccttccacagctcaagcgcccaagcttttgattcattgccccaagttgtggaagaggagttaatacgcaagcacatgaaaacagtggttgaaatggagaattctggtgtcattcatatgcttaaacataacaaaatagaagatctggcaagaatgtaccgtctctttgtcagagtgaaggatggcttaaagacagtatgtgactgtatgcgaggatatttacgagaacaaggaaaagctcttgttgtagaggaggaaggagaaagttgtaaaaaccccatcacctacattcagagtcttctagacttaaaggacagatttgatcatttcttgaacaattccttcagtaatgacagattattcaagcaggcaatatcttcagaatttgaacattttctcaatctcaatggaaaatcacctgaatttttgtccctttttgttgacgacaaattgaagaaaggagtaaaggggctttctgagcaagaagtagaaactgtattggataaatgtatggtgcttttcagatttcttcaagaaaaggatgtttttgaaagatattacaaacaacatctggccaagagacttcttctaggaaagagcatctcagatgactcagagaaaaatatgatctccaagctaaagactgagtgtggatgtcaatttacatccaaactagaaggcatgttcaaagatatgtcactatcacaatcaacaaatgatgaatttagacaacacatctccaacaatcagattaatctgatgggagtggatttggtggttagagttctcacaactgggttctggccaacccaggccgcctcgccaaagtgcactgttcctccccaggcccagcatgctttcgactgctttaaaaggttctatttaggttgtcacagtggaagacagctgactcttcaaccacaactaggaacagcggagctgaatgcgacctttccaccttccaagaaagagggtggtcccacagaaacacgacgacacatatttcaagtatcctcgtaccagatgtgtctgttaatgctgtttaatactcaagagagatggacttatgaggaaattagtcagcatacaaaattccccgaaagagatttaaaccggcgttgcaattctagggggggaaaagcaaaacaaagagttctactaaagatcctaaaggaagaaatatttctcgccaaaggtgaactggaacccgagagaaaggagaccagaagtaaatcggaagaagtggatccttttacagtagtttga

Transcript

evm.model.Ap8.219

ATGAGTATGCGATCCGGGAAGAAAGACACAAAGATGAGGATTCGGGCTTTTCCGATGACTATGGATGACAAGTATGTTGAAGATATCTGGAATTTACTGAAGAATGCCATTCAGGAGATTCAGAAAAAGAACAATAGTGGCCTGAGTTTTGAAGAATTGTACAGAAATGCGTACACTATGGTGTTGCACAAGCATGGAGAGAGGCTATACTCTGGACTCAAGCAAGTTGTTACAGAACATTTGGTAGAAAAGATACGCAAAGATGTAGTGATTTCACTCAACAATAATTTCCTGGACACATTGAATGCTGCTTGGAATGATCATCAAACATCAATGGTGATGATAAGAGATATTCTCATGTACATGGACAGAGTATATGTTCAACAAAATGGCGTTGATAATGTTTACAACTTAGGATTAATTCTTTTCAGGGACTTGGTGGTGAGGTATGGTAACATAAGAGATCATCTTTGTCAAACATTACTGACGCTTGTCAGAAGAGAGCGTAAGGGAGAAGTTGTTGACAGGATGGCCATCAGAAATGCTTGTCAGATGTTGATGATATTGGGTATTGACACTAGAAGTGTTTATGAAGAGGACTTTGAGAAGCCTTTCCTTGAAGAGTCTGCAGAATTCTACAAATTAGAAGGTCAAAAGTTCCTTGCAGAAAACAGTGCATCAGTATATATCCAGAAGGTTGAAGCCAGAATAAATGAAGAATCAGAACGGGCCAAGCATTACCTGGATCCCACCACTGAGGACCCTATTGTTAAGGGATCCCTCAACGAAGCGATTGAAAAAGCCGCCTCTGCTGCCGCTCAAGCTGCTGTCAGCGCCTTCCACAGCTCAAGCGCCCAAGCTTTTGATTCATTGCCCCAAGTTGTGGAAGAGGAGTTAATACGCAAGCACATGAAAACAGTGGTTGAAATGGAGAATTCTGGTGTCATTCATATGCTTAAACATAACAAAATAGAAGATCTGGCAAGAATGTACCGTCTCTTTGTCAGAGTGAAGGATGGCTTAAAGACAGTATGTGACTGTATGCGAGGATATTTACGAGAACAAGGAAAAGCTCTTGTTGTAGAGGAGGAAGGAGAAAGTTGTAAAAACCCCATCACCTACATTCAGAGTCTTCTAGACTTAAAGGACAGATTTGATCATTTCTTGAACAATTCCTTCAGTAATGACAGATTATTCAAGCAGGCAATATCTTCAGAATTTGAACATTTTCTCAATCTCAATGGAAAATCACCTGAATTTTTGTCCCTTTTTGTTGACGACAAATTGAAGAAAGGAGTAAAGGGGCTTTCTGAGCAAGAAGTAGAAACTGTATTGGATAAATGTATGGTGCTTTTCAGATTTCTTCAAGAAAAGGATGTTTTTGAAAGATATTACAAACAACATCTGGCCAAGAGACTTCTTCTAGGAAAGAGCATCTCAGATGACTCAGAGAAAAATATGATCTCCAAGCTAAAGACTGAGTGTGGATGTCAATTTACATCCAAACTAGAAGGCATGTTCAAAGATATGTCACTATCACAATCAACAAATGATGAATTTAGACAACACATCTCCAACAATCAGATTAATCTGATGGGAGTGGATTTGGTGGTTAGAGTTCTCACAACTGGGTTCTGGCCAACCCAGGCCGCCTCGCCAAAGTGCACTGTTCCTCCCCAGGCCCAGCATGCTTTCGACTGCTTTAAAAGGTTCTATTTAGGTTGTCACAGTGGAAGACAGCTGACTCTTCAACCACAACTAGGAACAGCGGAGCTGAATGCGACCTTTCCACCTTCCAAGAAAGAGGGTGGTCCCACAGAAACACGACGACACATATTTCAAGTATCCTCGTACCAGATGTGTCTGTTAATGCTGTTTAATACTCAAGAGAGATGGACTTATGAGGAAATTAGTCAGCATACAAAATTCCCCGAAAGAGATTTAAACCGGCGTTGCAATTCTAGGGGGGGAAAAGCAAAACAAAGAGTTCTACTAAAGATCCTAAAGGAAGAAATATTTCTCGCCAAAGGTGAACTGGAACCCGAGAGAAAGGAGACCAGAAGTAAATCGGAAGAAGTGGATCCTTTTACAGTAGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5DF89	Cullin-3 OS=Rattus norvegicus OX=10116 GN=Cul3 PE=1 SV=2
Q9JLV5	Cullin-3 OS=Mus musculus OX=10090 GN=Cul3 PE=1 SV=1
A4IHP4	Cullin-3 OS=Xenopus tropicalis OX=8364 GN=cul3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000554 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00888 all species →	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045093 all species →	Family	Cullin	Interproscan
IPR016158 all species →	Domain	Cullin homology domain	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR001373 all species →	Domain	Cullin, N-terminal	Interproscan
IPR036317 all species →	Homologous_superfamily	Cullin homology domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932 all species →	CULLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031463 all species →	Cellular Component	Cul3-RING ubiquitin ligase complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03869	CUL3; cullin 3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.