Genomic Location: Ap8:25079560...25093577
NR annotation: XP_020602352.1, bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.2269.1.5f15e850 |
| Transcript |
| evm.model.Ap8.2269.1.5f15e850 |
| Protein |
| evm.model.Ap8.2269.1.5f15e850 |
| UniProt accession | Description |
|---|---|
| Q6ZHE5 | D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=DCD1 PE=1 SV=2 |
| F4HYF3 | Bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DCD PE=1 SV=1 |
| Q9WY68 | Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0225 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001402 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00291 all species → | PALP | Pyridoxal-phosphate dependent enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027278 all species → | Family | 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase | Interproscan |
| IPR005966 all species → | Family | D-cysteine desulfhydrase | Interproscan |
| IPR036052 all species → | Homologous_superfamily | Tryptophan synthase beta chain-like, PALP domain superfamily | Interproscan |
| IPR001926 all species → | Domain | Tryptophan synthase beta chain-like, PALP domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43780 all species → | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0019148 all species → | Molecular Function | D-cysteine desulfhydrase activity | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05396 | dcyD; D-cysteine desulfhydrase | EC:4.4.1.15 | D-Amino acid metabolism | ko00470 | deepkoala |
Transcript abundance of evm.model.Ap8.2269.1.5f15e850 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
