Gene detail

Detailed information of evm.model.Ap8.229 in Astrangia poculata

Genomic Location: Ap8:2273045...2300792
NR annotation: XP_022791224.1, disks large homolog 1-like isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.229

atgccggttcgcaaggaagatgctggcaaagcccttgagctgttggagcgctattatgaaaagttaaacaagccacaagatcgagcgcttcgcactgccatcgagagagtaattcggatattccagagtcacctattcttggcccttctagatatacaagagttctacgaaaccacgttgctagatgacacaaaaacacctgagcagaaggcggaagagacagaagaagccgtacaaagatgggagaacagctcgccggttgagtcgcctccaagctacccagatttcgacacgcgaggtgtaaatggggaaactgtaccatccccactggtaacaacaagcattgtggaaagtgttcagcaagaaagctttcagagtaaaacgaccacagaaactactcatgttgatggagttgtggaaaatggttttcatgccgattctggtgattacgaatatgtggatatcactttggaaaggggtacaacaggccttgggtttagtattggtggcggaaaagataaccctcatatcgataatgacacgggaatttacatcacaaggattatcaaaggaggtgctgcagctgaggatggcaggcttggggtgggagactgcattgtggcagtgaatggtgtatcaacagtaaacgtctcacatcagcaggctgtggaagccttgaaggctgctggtggggttgtcacactgacaatgaagaaagagaaaccaaaaccagtcacaggaaaacagcacactgaagaaataatattgacaaaaggaactaagggtcttggttttagtattgccgggggcaagggaaatcaacacgtgcctaatgatgacggcatttacatcaccaagataattgatggaggggcagctcagcaggacggcaggctacaagtgggagataagattgtcagggttaatgatacatcattggaagatgtgacccatgaagatgctgttgccactctgaagaaaacagagaataaagtagtgattgttgtagccagagtgggtgtgatgtatgttgactcagagacacctcctccgcaatatcaagaagctgtcaagtccagtccacctcccccaccatcccctccaagggatgagaaaccaacggtagtctcaatacccacaccacccgtccaccaagaggacatcatgccaagtgaacaaacaaacagtttgccaagaaaaccacaagcgcctgctgtaccagaggatgacggctttacaagggaacccaggaaggtagtcttgaataaggggcccacaggccttgggttcaacattgttggaggtgaggacggtgaaggaatttttatctctttcatcctggccggaggtgtggctgatctgagcggagaactaagaagaggagatcagattctctcggtaaatgagacggatttggaggacgccacacacgagaaagcggcagctgcactaaaaggcgccggtaataccgtggcgattgtggctcagtacaaacccgaagaatacaaccagtttgaagcgaaaattcacgatattcgtgagaagatgatgaacagtggtagcccgggcactcttcgaacgtctgtcaagcgccagctatacgtgagggctttgtttgactacgacaaaacgaaggacagcggtcttcccagccaaggcctcagtttcaagtatggcgacattcttcacgtgaccaatgctagcgatgacgagtggtggcaggccagacgactgaatgctttgggggaggaggaagggagaggtgtcattcctagtaagagaagagtcgagagaagagaaaagtcaagaatgaagtcggtgaaattttcaagaacgagcgaggacaacaaagcgaagacttcattcaacgaaggcacgggcggccgcaagcgaagcttcaagttttccaagaagctgccattctttaagaaagaatccgaaaatgaaacgacaagcgacgtagagccgagttacacatcaaacgctagcgatagtgagagcagttacagcgccagggcggaagataacattctgtcgtatgaagctgtggtacaacacgagttacaatacaccagacctgtgatagtactgggcccactgaaggacagaatcaacgatgacctcatctctgaattcccggataaatttggcagctgcgtaccccacacgacacgcgagaggagagactacgaggttgacgggcgtgattaccacttcgtgacgtcacgcgaggagatggagcgatcaattcagaaccatatgtttatcgaagctgggcaatataacgagaatctttatggaacaagtgtgcattcagtaaaagaagtcgccgaaaagaataagcactgcattttggacgtgagtggttacgcaatcaaacgccttcaagtagctacactgtatcctatcgccatctttttaaaaccgaaatccgtggattccatccgggaacttaataaacggctgaccgaggagcaggcgcagaagacctatgacagagcacttaaactggagcaggagttcggagagtatttcactgcgcttgttcaaggtgacacatacgacgaaatctacagcaaaagcaaggaggttatacgtcagcaatcggggcctgtgatttggatcccttccaaagaaaaactatga

Transcript

evm.model.Ap8.229

ATGCCGGTTCGCAAGGAAGATGCTGGCAAAGCCCTTGAGCTGTTGGAGCGCTATTATGAAAAGTTAAACAAGCCACAAGATCGAGCGCTTCGCACTGCCATCGAGAGAGTAATTCGGATATTCCAGAGTCACCTATTCTTGGCCCTTCTAGATATACAAGAGTTCTACGAAACCACGTTGCTAGATGACACAAAAACACCTGAGCAGAAGGCGGAAGAGACAGAAGAAGCCGTACAAAGATGGGAGAACAGCTCGCCGGTTGAGTCGCCTCCAAGCTACCCAGATTTCGACACGCGAGGTGTAAATGGGGAAACTGTACCATCCCCACTGGTAACAACAAGCATTGTGGAAAGTGTTCAGCAAGAAAGCTTTCAGAGTAAAACGACCACAGAAACTACTCATGTTGATGGAGTTGTGGAAAATGGTTTTCATGCCGATTCTGGTGATTACGAATATGTGGATATCACTTTGGAAAGGGGTACAACAGGCCTTGGGTTTAGTATTGGTGGCGGAAAAGATAACCCTCATATCGATAATGACACGGGAATTTACATCACAAGGATTATCAAAGGAGGTGCTGCAGCTGAGGATGGCAGGCTTGGGGTGGGAGACTGCATTGTGGCAGTGAATGGTGTATCAACAGTAAACGTCTCACATCAGCAGGCTGTGGAAGCCTTGAAGGCTGCTGGTGGGGTTGTCACACTGACAATGAAGAAAGAGAAACCAAAACCAGTCACAGGAAAACAGCACACTGAAGAAATAATATTGACAAAAGGAACTAAGGGTCTTGGTTTTAGTATTGCCGGGGGCAAGGGAAATCAACACGTGCCTAATGATGACGGCATTTACATCACCAAGATAATTGATGGAGGGGCAGCTCAGCAGGACGGCAGGCTACAAGTGGGAGATAAGATTGTCAGGGTTAATGATACATCATTGGAAGATGTGACCCATGAAGATGCTGTTGCCACTCTGAAGAAAACAGAGAATAAAGTAGTGATTGTTGTAGCCAGAGTGGGTGTGATGTATGTTGACTCAGAGACACCTCCTCCGCAATATCAAGAAGCTGTCAAGTCCAGTCCACCTCCCCCACCATCCCCTCCAAGGGATGAGAAACCAACGGTAGTCTCAATACCCACACCACCCGTCCACCAAGAGGACATCATGCCAAGTGAACAAACAAACAGTTTGCCAAGAAAACCACAAGCGCCTGCTGTACCAGAGGATGACGGCTTTACAAGGGAACCCAGGAAGGTAGTCTTGAATAAGGGGCCCACAGGCCTTGGGTTCAACATTGTTGGAGGTGAGGACGGTGAAGGAATTTTTATCTCTTTCATCCTGGCCGGAGGTGTGGCTGATCTGAGCGGAGAACTAAGAAGAGGAGATCAGATTCTCTCGGTAAATGAGACGGATTTGGAGGACGCCACACACGAGAAAGCGGCAGCTGCACTAAAAGGCGCCGGTAATACCGTGGCGATTGTGGCTCAGTACAAACCCGAAGAATACAACCAGTTTGAAGCGAAAATTCACGATATTCGTGAGAAGATGATGAACAGTGGTAGCCCGGGCACTCTTCGAACGTCTGTCAAGCGCCAGCTATACGTGAGGGCTTTGTTTGACTACGACAAAACGAAGGACAGCGGTCTTCCCAGCCAAGGCCTCAGTTTCAAGTATGGCGACATTCTTCACGTGACCAATGCTAGCGATGACGAGTGGTGGCAGGCCAGACGACTGAATGCTTTGGGGGAGGAGGAAGGGAGAGGTGTCATTCCTAGTAAGAGAAGAGTCGAGAGAAGAGAAAAGTCAAGAATGAAGTCGGTGAAATTTTCAAGAACGAGCGAGGACAACAAAGCGAAGACTTCATTCAACGAAGGCACGGGCGGCCGCAAGCGAAGCTTCAAGTTTTCCAAGAAGCTGCCATTCTTTAAGAAAGAATCCGAAAATGAAACGACAAGCGACGTAGAGCCGAGTTACACATCAAACGCTAGCGATAGTGAGAGCAGTTACAGCGCCAGGGCGGAAGATAACATTCTGTCGTATGAAGCTGTGGTACAACACGAGTTACAATACACCAGACCTGTGATAGTACTGGGCCCACTGAAGGACAGAATCAACGATGACCTCATCTCTGAATTCCCGGATAAATTTGGCAGCTGCGTACCCCACACGACACGCGAGAGGAGAGACTACGAGGTTGACGGGCGTGATTACCACTTCGTGACGTCACGCGAGGAGATGGAGCGATCAATTCAGAACCATATGTTTATCGAAGCTGGGCAATATAACGAGAATCTTTATGGAACAAGTGTGCATTCAGTAAAAGAAGTCGCCGAAAAGAATAAGCACTGCATTTTGGACGTGAGTGGTTACGCAATCAAACGCCTTCAAGTAGCTACACTGTATCCTATCGCCATCTTTTTAAAACCGAAATCCGTGGATTCCATCCGGGAACTTAATAAACGGCTGACCGAGGAGCAGGCGCAGAAGACCTATGACAGAGCACTTAAACTGGAGCAGGAGTTCGGAGAGTATTTCACTGCGCTTGTTCAAGGTGACACATACGACGAAATCTACAGCAAAAGCAAGGAGGTTATACGTCAGCAATCGGGGCCTGTGATTTGGATCCCTTCCAAAGAAAAACTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A8C0TYJ0	Disks large homolog 1 OS=Canis lupus familiaris OX=9615 GN=DLG1 PE=3 SV=1
Q28C55	Disks large homolog 1 OS=Xenopus tropicalis OX=8364 GN=dlg1 PE=2 SV=1
Q12959	Disks large homolog 1 OS=Homo sapiens OX=9606 GN=DLG1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002696 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF09058 all species →	L27_1	L27_1	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050614 all species →	Family	Synaptic Scaffolding LAP/MAGUK Families	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR015143 all species →	Domain	L27-1	Interproscan
IPR036892 all species →	Homologous_superfamily	L27 domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR004172 all species →	Domain	L27 domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR020590 all species →	Conserved_site	Guanylate kinase, conserved site	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR008144 all species →	Domain	Guanylate kinase-like domain	Interproscan
IPR016313 all species →	Family	Disks large 1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23119 all species →	DISCS LARGE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0009790 all species →	Biological Process	embryo development	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0031594 all species →	Cellular Component	neuromuscular junction	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0045197 all species →	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0097120 all species →	Biological Process	receptor localization to synapse	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0098839 all species →	Cellular Component	postsynaptic density membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12076	DLG1; disks large protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.