Gene detail

Detailed information of evm.model.Ap8.230 in Astrangia poculata

Genomic Location: Ap8:2314567...2320049
NR annotation: XP_020614593.1, mediator of RNA polymerase II transcription subunit 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q561X3	Mediator of RNA polymerase II transcription subunit 4 OS=Danio rerio OX=7955 GN=med4 PE=2 SV=1
Q5M8Y7	Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus tropicalis OX=8364 GN=med4 PE=2 SV=1
Q5XG48	Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus laevis OX=8355 GN=med4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006133 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10018 all species →	Med4	Vitamin-D-receptor interacting Mediator subunit 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019258 all species →	Family	Mediator complex, subunit Med4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13208 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15146	MED4; mediator of RNA polymerase II transcription subunit 4	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.