Detailed information of evm.model.Ap8.2325 in Astrangia poculata

Genomic Location: Ap8:25436366...25469409
NR annotation: CAH3119489.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5JPE7BOS complex subunit NOMO2 OS=Homo sapiens OX=9606 GN=NOMO2 PE=1 SV=1
P69849BOS complex subunit NOMO3 OS=Homo sapiens OX=9606 GN=NOMO3 PE=1 SV=2
Q15155BOS complex subunit NOMO1 OS=Homo sapiens OX=9606 GN=NOMO1 PE=1 SV=5
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004649 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap8.2325. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR013784
all species →		Homologous_superfamilyCarbohydrate-binding-like foldInterproscan
IPR051417
all species →		FamilySerine-Aspartate Repeat-ContainingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23303
all species →		CARBOXYPEPTIDASE REGULATORY REGION-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0030246
all species →		Molecular Functioncarbohydrate bindingInterproscan
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26500NOMO1_2_3; BOS complex subunit NOMO-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap8.2325 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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