Gene detail

Detailed information of evm.model.Ap8.2378 in Astrangia poculata

Genomic Location: Ap8:25944654...25962210
NR annotation: CAH3119588.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2378

atggcggacggtggtagaccggtcggaagctctccaaatctgtctttggatctttcatttaaatccagcgaaacttcagaatcttctcaatcaaacgaacgtcttttctccccagattcggccagaaggcagcgatttttctcagagccttccaagctagcagctgtggtggggcaagtctgtgcccacaagaaacacgatgtttaccagactttgcaagagactttggatgttctcaacgacgaagcggtcgtgtcaagggattcccacaagaaagaaggcttgtggtgtcatccctttgaaatccctcgtcatccaatagaacagattgagctgaagaatgaagaaatcgatctacaaagacaacattcgaaaatgatagaaagtttgactccagatgatttcaccgaaatagaagaagtcatgaaaaaagaaatggaggaccccctgatacagggcggtgaacggttgcctttttatcaaaaactgtccatttccggtggagatataagcggggtgtctatcgatgaactgcaacaggcagcgaagcttatagttgaggccttgtttatcagatcaaagtacatggcactgagtatgcaaagtttttgtccgacaactgctcgtaaactaaagactgttcatacagattttgatgtggaaaatcattattttcatttgaagcaccattcttatgacgaagatcgagatgatacctgccttcagccattctcagtccagtcaccatatgagatcgacatccctggcgactgtggatacctgtttgaaattattgatggcgtcattcagatcacagcttgcaaacggagcatgagcgctgatgttactgttagtgaaagtgccaaaccagggatgcaccctgtcccaaatctgcaggaattttttgaagatcaaaatattcttctggctctgtcaacccatggacctataaagtcatttgcccaccggcgtctgaagtacttagattaccgttatagtcttcattccttgttaaatgagagcagagagctggcagccatgaaggatgttgcccacagggacttctacaatgtcagaaaggtggacactcacattcacgcagcttctggcatgaatcagaaacacttgttgcgtttcataaaaaggaagtttaagtataatgccgatgatattgtcatgatccatgatggaaaggaagtcactttacgtgaggtctttgctatgttgaatttgactccatatgatctgagtgttgacagacttgatgtacatgctgataggaacacttttcatcggtttgacaagttcaacactaaatacaatcccataggtgacagcaagttgagggaaatctttctcaagacagacaatcacatcaatggccggtactttgcagagttaatgaaggaagttatgtcagacttggaggaaagcaagtatcagaatgccgagtacagattatccatatatggacgatctaagaaagagtgggataagttggcttcttgggctgtggagaataatatgtactctgataacgtgcggtggctgattcagattcctcgactttatgatgtctatagaacaaagaaccttgtaaagaatttccaagagatgctggagaacatttttgttccgttatttgaagcaacagtcaaccctcagtctcaccctgatcttcacaagtttcttacacaggttgcaggccttgacagtgtggatgacgagagtaaagctgagagccacttgtttacaaccaagagtcccttgcctgtggactggaacaccgaggacaatccaccttactcctattacctttattacatgtactccaacatggtggtccttaatcacttgagaaaagagcgtggttttaacacatttgtattgcgacctcactgtggcgaggcaggtcccgcccatcatttggtgtcagcctttatgttggccgagaacattaaccatggtcttcttcttagaaaggtgccagctctgcagtacctctactacttggctcaaatcggcctcgccatgtcaccacttagcaacaactcgcttttccttaactaccagaggaaccctctgccagatttcctggcccgtggattggtagtgtctttgtcgactgatgacccactcatgtttcattttaccaaggagcctttgatggaggagtacagtattgcagcgcaggtgtggaagctaagcccgtgtgacatgtcagagctggccagacacagtgtccatatgagtggctttgaggataaggtgaaacgtcattggattggtgacgattacaagaaagaaggatccgccggaaatgacgtacacaagaccaatgtcccggatatccgagtggcgttccgtctcgagactttggtggaggaactgagcacgatctgcacggctgcacgtgtttaa

Transcript

evm.model.Ap8.2378

ATGGCGGACGGTGGTAGACCGGTCGGAAGCTCTCCAAATCTGTCTTTGGATCTTTCATTTAAATCCAGCGAAACTTCAGAATCTTCTCAATCAAACGAACGTCTTTTCTCCCCAGATTCGGCCAGAAGGCAGCGATTTTTCTCAGAGCCTTCCAAGCTAGCAGCTGTGGTGGGGCAAGTCTGTGCCCACAAGAAACACGATGTTTACCAGACTTTGCAAGAGACTTTGGATGTTCTCAACGACGAAGCGGTCGTGTCAAGGGATTCCCACAAGAAAGAAGGCTTGTGGTGTCATCCCTTTGAAATCCCTCGTCATCCAATAGAACAGATTGAGCTGAAGAATGAAGAAATCGATCTACAAAGACAACATTCGAAAATGATAGAAAGTTTGACTCCAGATGATTTCACCGAAATAGAAGAAGTCATGAAAAAAGAAATGGAGGACCCCCTGATACAGGGCGGTGAACGGTTGCCTTTTTATCAAAAACTGTCCATTTCCGGTGGAGATATAAGCGGGGTGTCTATCGATGAACTGCAACAGGCAGCGAAGCTTATAGTTGAGGCCTTGTTTATCAGATCAAAGTACATGGCACTGAGTATGCAAAGTTTTTGTCCGACAACTGCTCGTAAACTAAAGACTGTTCATACAGATTTTGATGTGGAAAATCATTATTTTCATTTGAAGCACCATTCTTATGACGAAGATCGAGATGATACCTGCCTTCAGCCATTCTCAGTCCAGTCACCATATGAGATCGACATCCCTGGCGACTGTGGATACCTGTTTGAAATTATTGATGGCGTCATTCAGATCACAGCTTGCAAACGGAGCATGAGCGCTGATGTTACTGTTAGTGAAAGTGCCAAACCAGGGATGCACCCTGTCCCAAATCTGCAGGAATTTTTTGAAGATCAAAATATTCTTCTGGCTCTGTCAACCCATGGACCTATAAAGTCATTTGCCCACCGGCGTCTGAAGTACTTAGATTACCGTTATAGTCTTCATTCCTTGTTAAATGAGAGCAGAGAGCTGGCAGCCATGAAGGATGTTGCCCACAGGGACTTCTACAATGTCAGAAAGGTGGACACTCACATTCACGCAGCTTCTGGCATGAATCAGAAACACTTGTTGCGTTTCATAAAAAGGAAGTTTAAGTATAATGCCGATGATATTGTCATGATCCATGATGGAAAGGAAGTCACTTTACGTGAGGTCTTTGCTATGTTGAATTTGACTCCATATGATCTGAGTGTTGACAGACTTGATGTACATGCTGATAGGAACACTTTTCATCGGTTTGACAAGTTCAACACTAAATACAATCCCATAGGTGACAGCAAGTTGAGGGAAATCTTTCTCAAGACAGACAATCACATCAATGGCCGGTACTTTGCAGAGTTAATGAAGGAAGTTATGTCAGACTTGGAGGAAAGCAAGTATCAGAATGCCGAGTACAGATTATCCATATATGGACGATCTAAGAAAGAGTGGGATAAGTTGGCTTCTTGGGCTGTGGAGAATAATATGTACTCTGATAACGTGCGGTGGCTGATTCAGATTCCTCGACTTTATGATGTCTATAGAACAAAGAACCTTGTAAAGAATTTCCAAGAGATGCTGGAGAACATTTTTGTTCCGTTATTTGAAGCAACAGTCAACCCTCAGTCTCACCCTGATCTTCACAAGTTTCTTACACAGGTTGCAGGCCTTGACAGTGTGGATGACGAGAGTAAAGCTGAGAGCCACTTGTTTACAACCAAGAGTCCCTTGCCTGTGGACTGGAACACCGAGGACAATCCACCTTACTCCTATTACCTTTATTACATGTACTCCAACATGGTGGTCCTTAATCACTTGAGAAAAGAGCGTGGTTTTAACACATTTGTATTGCGACCTCACTGTGGCGAGGCAGGTCCCGCCCATCATTTGGTGTCAGCCTTTATGTTGGCCGAGAACATTAACCATGGTCTTCTTCTTAGAAAGGTGCCAGCTCTGCAGTACCTCTACTACTTGGCTCAAATCGGCCTCGCCATGTCACCACTTAGCAACAACTCGCTTTTCCTTAACTACCAGAGGAACCCTCTGCCAGATTTCCTGGCCCGTGGATTGGTAGTGTCTTTGTCGACTGATGACCCACTCATGTTTCATTTTACCAAGGAGCCTTTGATGGAGGAGTACAGTATTGCAGCGCAGGTGTGGAAGCTAAGCCCGTGTGACATGTCAGAGCTGGCCAGACACAGTGTCCATATGAGTGGCTTTGAGGATAAGGTGAAACGTCATTGGATTGGTGACGATTACAAGAAAGAAGGATCCGCCGGAAATGACGTACACAAGACCAATGTCCCGGATATCCGAGTGGCGTTCCGTCTCGAGACTTTGGTGGAGGAACTGAGCACGATCTGCACGGCTGCACGTGTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01433	AMP deaminase 2 OS=Homo sapiens OX=9606 GN=AMPD2 PE=1 SV=3
Q02356	AMP deaminase 2 OS=Rattus norvegicus OX=10116 GN=Ampd2 PE=1 SV=2
Q9DBT5	AMP deaminase 2 OS=Mus musculus OX=10090 GN=Ampd2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002773 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19326 all species →	AMP_deaminase	AMP deaminase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006329 all species →	Family	AMP deaminase	Interproscan
IPR006650 all species →	Active_site	Adenosine/AMP deaminase active site	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11359 all species →	AMP DEAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003876 all species →	Molecular Function	AMP deaminase activity	Interproscan
GO:0032264 all species →	Biological Process	IMP salvage	Interproscan
GO:0009168 all species →	Biological Process	purine ribonucleoside monophosphate biosynthetic process	Interproscan
GO:0019239 all species →	Molecular Function	deaminase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006188 all species →	Biological Process	IMP biosynthetic process	Interproscan
GO:0046033 all species →	Biological Process	AMP metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01490	AMPD; AMP deaminase	EC:3.5.4.6	Cytoskeleton in muscle cells	ko04820	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.