Gene detail

Detailed information of evm.model.Ap8.2392 in Astrangia poculata

Genomic Location: Ap8:26093122...26106710
NR annotation: KAJ7333063.1, hypothetical protein OS493_018232 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2392

atggctgacccgaagataatgccgagcggcaaggacctccgtaaagcctcaagaaagagtgtcggtggcatctcactggaacatgtggccggttctaaagctgaaaaagccagacggcgtaaaagtgttgcctcgcaatttgctcatccattgacgggcgaaacagtcaaggaaagacaacaaagagcgagagaaaaccgtgaagctcggaagaggatgatatcagatgagtacaggtttattatgggaattgttggaagctatttagatcttgaagcctccgctgtagaagaatttattattgattcagaagagtggaattatggtaacaaaacatactttgctatcgactggattgcaatttatcccatggatagccttatccactcttcaaacaaatggacccaggttgaggacaagtcagtcacaatcactgaagtgcgaggccgttctgtgctacatgctcccaagtctggtaaagtgcatgtactcctggtgactgatggactagaagagggattgactggaactctggtgtactgtgtcaagacagatgccaataaggagctaaagatgagaaatattgctgatgaagcatgctttggagcgatcaacgtaacagaggcaggatccctcattccagccctcagagcacatcttactaagatctatgtaccagctgttaaagccatgtccaactggggagagcttacacagactccacaaggcgtaaaagccagcaaagagtttgctgaatcattagacagctttgttcattttattgatggagctcatgcatcagtgaatgaagccatcaaactgcacccatgtgatgtgttagatgtgagttctcttgagggtccagctgactatcaggctatagcaaacaatacagaaatactggctgcactggatgacctggtgcactcttggtgcaagcagattgaacaggtgttagcagagagtgagcaaatgaggaaagaagcagatgatactgggcccatggcagaactggaacactggaagatgaggatggctaaatttaactcactggtggagcaaatcaagggtgctgactgtaaagcagttataagaatactgcttattgccaagtctaaaacactcaagttttggcgtgagctggactgtcgcattacagatgctgccaatgaagctaaggacaatgtgaagtatctgtacacactggagaaagagtgtgatccactctatcatgcagatccggtgacaaatcaaatggtgactgcatgtaaaaactacttaactgacaggggcgtgacccgagtgtgggatcaaccaaggcaacctctgatagagaagctcaaggcctgtctgaggttaaaccaggagtatcagagatgcttccaacgaacaaagatgaagatcgctgaggatcctgcaatgaaaccatttgaattctccgagatgtacatttttggcaaattcgacacattttgcaaacgtttgaatcaggatcggcacatgaaaagtacggcgtctgaatcaaagtcgttccaaaggcgttccactggcgaaattctcggccaagccaggcgggaagaacggatcatagaagtgatgaatgcactagaaacgttttctgttttgaccgagtctaagatagaaggaattgaaacaatctccaacagattccagcatatgtacgcagcgctaaagaagaagccttatgatccgttggaccacaggaaaccggactttgaggcagatttctctgaattcaggcggcagatttttgacatcgagaaacacttagaaatgtttatgagcggctgctttgagaaaattgtcacaatttcgcagtccctggagctacttgacagatttgaaaagcttggaattcccagtctgcagtcatccatcgaagagcggtatgcaggccttcttcatcacttcggcaaggaagtagaagtcatatcgaaggtacagaagtcttctcagtttacagccgtttattgggtctaa

Transcript

evm.model.Ap8.2392

ATGGCTGACCCGAAGATAATGCCGAGCGGCAAGGACCTCCGTAAAGCCTCAAGAAAGAGTGTCGGTGGCATCTCACTGGAACATGTGGCCGGTTCTAAAGCTGAAAAAGCCAGACGGCGTAAAAGTGTTGCCTCGCAATTTGCTCATCCATTGACGGGCGAAACAGTCAAGGAAAGACAACAAAGAGCGAGAGAAAACCGTGAAGCTCGGAAGAGGATGATATCAGATGAGTACAGGTTTATTATGGGAATTGTTGGAAGCTATTTAGATCTTGAAGCCTCCGCTGTAGAAGAATTTATTATTGATTCAGAAGAGTGGAATTATGGTAACAAAACATACTTTGCTATCGACTGGATTGCAATTTATCCCATGGATAGCCTTATCCACTCTTCAAACAAATGGACCCAGGTTGAGGACAAGTCAGTCACAATCACTGAAGTGCGAGGCCGTTCTGTGCTACATGCTCCCAAGTCTGGTAAAGTGCATGTACTCCTGGTGACTGATGGACTAGAAGAGGGATTGACTGGAACTCTGGTGTACTGTGTCAAGACAGATGCCAATAAGGAGCTAAAGATGAGAAATATTGCTGATGAAGCATGCTTTGGAGCGATCAACGTAACAGAGGCAGGATCCCTCATTCCAGCCCTCAGAGCACATCTTACTAAGATCTATGTACCAGCTGTTAAAGCCATGTCCAACTGGGGAGAGCTTACACAGACTCCACAAGGCGTAAAAGCCAGCAAAGAGTTTGCTGAATCATTAGACAGCTTTGTTCATTTTATTGATGGAGCTCATGCATCAGTGAATGAAGCCATCAAACTGCACCCATGTGATGTGTTAGATGTGAGTTCTCTTGAGGGTCCAGCTGACTATCAGGCTATAGCAAACAATACAGAAATACTGGCTGCACTGGATGACCTGGTGCACTCTTGGTGCAAGCAGATTGAACAGGTGTTAGCAGAGAGTGAGCAAATGAGGAAAGAAGCAGATGATACTGGGCCCATGGCAGAACTGGAACACTGGAAGATGAGGATGGCTAAATTTAACTCACTGGTGGAGCAAATCAAGGGTGCTGACTGTAAAGCAGTTATAAGAATACTGCTTATTGCCAAGTCTAAAACACTCAAGTTTTGGCGTGAGCTGGACTGTCGCATTACAGATGCTGCCAATGAAGCTAAGGACAATGTGAAGTATCTGTACACACTGGAGAAAGAGTGTGATCCACTCTATCATGCAGATCCGGTGACAAATCAAATGGTGACTGCATGTAAAAACTACTTAACTGACAGGGGCGTGACCCGAGTGTGGGATCAACCAAGGCAACCTCTGATAGAGAAGCTCAAGGCCTGTCTGAGGTTAAACCAGGAGTATCAGAGATGCTTCCAACGAACAAAGATGAAGATCGCTGAGGATCCTGCAATGAAACCATTTGAATTCTCCGAGATGTACATTTTTGGCAAATTCGACACATTTTGCAAACGTTTGAATCAGGATCGGCACATGAAAAGTACGGCGTCTGAATCAAAGTCGTTCCAAAGGCGTTCCACTGGCGAAATTCTCGGCCAAGCCAGGCGGGAAGAACGGATCATAGAAGTGATGAATGCACTAGAAACGTTTTCTGTTTTGACCGAGTCTAAGATAGAAGGAATTGAAACAATCTCCAACAGATTCCAGCATATGTACGCAGCGCTAAAGAAGAAGCCTTATGATCCGTTGGACCACAGGAAACCGGACTTTGAGGCAGATTTCTCTGAATTCAGGCGGCAGATTTTTGACATCGAGAAACACTTAGAAATGTTTATGAGCGGCTGCTTTGAGAAAATTGTCACAATTTCGCAGTCCCTGGAGCTACTTGACAGATTTGAAAAGCTTGGAATTCCCAGTCTGCAGTCATCCATCGAAGAGCGGTATGCAGGCCTTCTTCATCACTTCGGCAAGGAAGTAGAAGTCATATCGAAGGTACAGAAGTCTTCTCAGTTTACAGCCGTTTATTGGGTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TE73	Dynein axonemal heavy chain 5 OS=Homo sapiens OX=9606 GN=DNAH5 PE=1 SV=3
Q8VHE6	Dynein axonemal heavy chain 5 OS=Mus musculus OX=10090 GN=Dnah5 PE=1 SV=2
M0R8U1	Dynein axonemal heavy chain 5 (Fragment) OS=Rattus norvegicus OX=10116 GN=Dnah5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000596 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08385 all species →	DHC_N1	Dynein heavy chain, N-terminal region 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026983 all species →	Family	Dynein heavy chain	Interproscan
IPR013594 all species →	Domain	Dynein heavy chain, tail	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46532 all species →	MALE FERTILITY FACTOR KL5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005858 all species →	Cellular Component	axonemal dynein complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan
GO:0045505 all species →	Molecular Function	dynein intermediate chain binding	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.2392.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.