Gene detail

Detailed information of evm.model.Ap8.2440 in Astrangia poculata

Genomic Location: Ap8:26594806...26605810
NR annotation: XP_027047720.1, hormone-sensitive lipase-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2440

atggcggacacgaacccggcttccgacaacctcaacttaggaggctatgattctctaccgcttctctttcggcacttgaaacgaatccttgccgataatacagagtattttgaaaaacacacgtctaaggcagtttacaagaagttttacgatggctttaatttgatgctttcaactatagattctttggaggaaggagcgattttgctcgcaaagacagcaccattgtacgactacagcagcgatgctaagggaaacggttacaggagcttgctaagactcgtcgagcagtgtattcgctctgttacggaattgtccgcttattgccaaacacatcgagacagattttatttccgatcgcatcactatagtttagaagtggaggcattcgccaatgtttttgaacgaacgaatcagttgttgcaatatgcgaaacttgttatagaggacagcgtaccggataatttatttccggagagttttgattctaaagtcatgttggaagtcgagcagttggatagagaatgtttttatgggagaacgttgggattccagttctctactggtttgcgacatttcttacaagttgtttgtgtagctatggcctcatttgccgagggttatcatagacacaaaatgagcagtgtggcgctagcaacagtgtcttttctgaacagtggaaagtatacagtgaatcctgagatgagagccaagatgatcgtagccgtcactcagaagactaacatggatttttgtaaagctttctggagtttgacagaaggttatggaatccagcacataccgttgttggttggttcagcgatgaaggtgaacagagtattccatatccctccagagccatttgaacttttaatgttgaatggtgagactgtgagtatggctcccccctgctcctggtcaggtcttgctccagtccaagtgcgacttctgtcatatgagtggagggaaggacagagcaaagatggcaaagagagttccacccaccatggtcgatcaccaaagcccaaaagtgatggcttgttacttcatgtacatggcggaggatttgttgctcagtcgtcaaaatcacatgagatgtaccttcgtacatgggcgtatgaacttggtgtacccatcttatctatagactactcactagcaccagaagcgcccttcccaagggccctggaggagtgtttctttgtatacgcctggtgtttaaataactttcatcagcttggaactactggaaagtgtttctgtttagctggagactctgcaggtgggaacttagtagtttcactgagcatgcgtgctgccgagtatggcatccgagtaccagactccatcctagctgcctatgcaccgtttaatgtacagtgggtaccctcgccatcccgtctactgagcctgatggaccctctcctacccaccggagtgctgggcgcatgcctggcggcgtactcaggcatgggcaagtcaccatttgatgactgcaccaagaattcaattaaatctctgactggaaaaactagtcaaccggtgaatgttgtcgcgaaaagaacaaagacgaactctttgttgcgtcttttaagagttggatctaaggagtctaagaatgcaagaagcaatttggaagcccattttcaatcgggtcccgagagttttcacagttgtgttagctcgccgcaaagtgtggagtcggtgaaagtaaataacacgacaacctcgaacagtgaggctgttgtgggttatcactgcacaaagaatttaccagattgcaatggagttgtacaccattcctcagaagcacacatcgaacatacttcttcaaatcatcattgtgaaagtagcagtacttcatcgagccatccgcaatcaagaaaacactcacaagataccataccaagtaggcccacgagccctcagagaagtaaacatggcggaggagacgagacggaccatatagcagtgcattaccataaggacatcgaggagtgccatgtggtgaacgtggtggagtcaccagacagcccctctggggagctccttttgttccctcttgatgcacctcaagatgcgccgtatttggaggcaggtacaccaccagaggaggacgaggaaggggaacatgaagatgacccgcattctaggaccacatctatgtcccaagtttgccttcctattgctaagaacccttacatgtcgccactgcttgcccctgatgaaatgctcaagagcttgcctccaattgatttagtggcctgcacactggatcccatacttgacgactcggtcgagtttgcccgtcggctacgttccttagggcaggacgtggaactgtacatcttagaagatttaccccacggttttttgagcttccatcttgtcagtcaagaagccagggaagggaatgaactgtgtgttgtctgcttaaaaagaacattgtcaggaaagcgaaaagtgggaaatacagaaaaggccccggtgtactaa

Transcript

evm.model.Ap8.2440

ATGGCGGACACGAACCCGGCTTCCGACAACCTCAACTTAGGAGGCTATGATTCTCTACCGCTTCTCTTTCGGCACTTGAAACGAATCCTTGCCGATAATACAGAGTATTTTGAAAAACACACGTCTAAGGCAGTTTACAAGAAGTTTTACGATGGCTTTAATTTGATGCTTTCAACTATAGATTCTTTGGAGGAAGGAGCGATTTTGCTCGCAAAGACAGCACCATTGTACGACTACAGCAGCGATGCTAAGGGAAACGGTTACAGGAGCTTGCTAAGACTCGTCGAGCAGTGTATTCGCTCTGTTACGGAATTGTCCGCTTATTGCCAAACACATCGAGACAGATTTTATTTCCGATCGCATCACTATAGTTTAGAAGTGGAGGCATTCGCCAATGTTTTTGAACGAACGAATCAGTTGTTGCAATATGCGAAACTTGTTATAGAGGACAGCGTACCGGATAATTTATTTCCGGAGAGTTTTGATTCTAAAGTCATGTTGGAAGTCGAGCAGTTGGATAGAGAATGTTTTTATGGGAGAACGTTGGGATTCCAGTTCTCTACTGGTTTGCGACATTTCTTACAAGTTGTTTGTGTAGCTATGGCCTCATTTGCCGAGGGTTATCATAGACACAAAATGAGCAGTGTGGCGCTAGCAACAGTGTCTTTTCTGAACAGTGGAAAGTATACAGTGAATCCTGAGATGAGAGCCAAGATGATCGTAGCCGTCACTCAGAAGACTAACATGGATTTTTGTAAAGCTTTCTGGAGTTTGACAGAAGGTTATGGAATCCAGCACATACCGTTGTTGGTTGGTTCAGCGATGAAGGTGAACAGAGTATTCCATATCCCTCCAGAGCCATTTGAACTTTTAATGTTGAATGGTGAGACTGTGAGTATGGCTCCCCCCTGCTCCTGGTCAGGTCTTGCTCCAGTCCAAGTGCGACTTCTGTCATATGAGTGGAGGGAAGGACAGAGCAAAGATGGCAAAGAGAGTTCCACCCACCATGGTCGATCACCAAAGCCCAAAAGTGATGGCTTGTTACTTCATGTACATGGCGGAGGATTTGTTGCTCAGTCGTCAAAATCACATGAGATGTACCTTCGTACATGGGCGTATGAACTTGGTGTACCCATCTTATCTATAGACTACTCACTAGCACCAGAAGCGCCCTTCCCAAGGGCCCTGGAGGAGTGTTTCTTTGTATACGCCTGGTGTTTAAATAACTTTCATCAGCTTGGAACTACTGGAAAGTGTTTCTGTTTAGCTGGAGACTCTGCAGGTGGGAACTTAGTAGTTTCACTGAGCATGCGTGCTGCCGAGTATGGCATCCGAGTACCAGACTCCATCCTAGCTGCCTATGCACCGTTTAATGTACAGTGGGTACCCTCGCCATCCCGTCTACTGAGCCTGATGGACCCTCTCCTACCCACCGGAGTGCTGGGCGCATGCCTGGCGGCGTACTCAGGCATGGGCAAGTCACCATTTGATGACTGCACCAAGAATTCAATTAAATCTCTGACTGGAAAAACTAGTCAACCGGTGAATGTTGTCGCGAAAAGAACAAAGACGAACTCTTTGTTGCGTCTTTTAAGAGTTGGATCTAAGGAGTCTAAGAATGCAAGAAGCAATTTGGAAGCCCATTTTCAATCGGGTCCCGAGAGTTTTCACAGTTGTGTTAGCTCGCCGCAAAGTGTGGAGTCGGTGAAAGTAAATAACACGACAACCTCGAACAGTGAGGCTGTTGTGGGTTATCACTGCACAAAGAATTTACCAGATTGCAATGGAGTTGTACACCATTCCTCAGAAGCACACATCGAACATACTTCTTCAAATCATCATTGTGAAAGTAGCAGTACTTCATCGAGCCATCCGCAATCAAGAAAACACTCACAAGATACCATACCAAGTAGGCCCACGAGCCCTCAGAGAAGTAAACATGGCGGAGGAGACGAGACGGACCATATAGCAGTGCATTACCATAAGGACATCGAGGAGTGCCATGTGGTGAACGTGGTGGAGTCACCAGACAGCCCCTCTGGGGAGCTCCTTTTGTTCCCTCTTGATGCACCTCAAGATGCGCCGTATTTGGAGGCAGGTACACCACCAGAGGAGGACGAGGAAGGGGAACATGAAGATGACCCGCATTCTAGGACCACATCTATGTCCCAAGTTTGCCTTCCTATTGCTAAGAACCCTTACATGTCGCCACTGCTTGCCCCTGATGAAATGCTCAAGAGCTTGCCTCCAATTGATTTAGTGGCCTGCACACTGGATCCCATACTTGACGACTCGGTCGAGTTTGCCCGTCGGCTACGTTCCTTAGGGCAGGACGTGGAACTGTACATCTTAGAAGATTTACCCCACGGTTTTTTGAGCTTCCATCTTGTCAGTCAAGAAGCCAGGGAAGGGAATGAACTGTGTGTTGTCTGCTTAAAAAGAACATTGTCAGGAAAGCGAAAAGTGGGAAATACAGAAAAGGCCCCGGTGTACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68J42	Hormone-sensitive lipase OS=Sus scrofa OX=9823 GN=LIPE PE=2 SV=1
Q9R101	Hormone-sensitive lipase OS=Ictidomys tridecemlineatus OX=43179 GN=LIPE PE=2 SV=1
P54310	Hormone-sensitive lipase OS=Mus musculus OX=10090 GN=Lipe PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006016 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06350 all species →	HSL_N	Hormone-sensitive lipase (HSL) N-terminus	Family	Interproscan
PF07859 all species →	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002168 all species →	Active_site	Lipase, GDXG, putative histidine active site	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR010468 all species →	Domain	Hormone-sensitive lipase, N-terminal	Interproscan
IPR013094 all species →	Domain	Alpha/beta hydrolase fold-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23025 all species →	TRIACYLGLYCEROL LIPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004771 all species →	Molecular Function	sterol ester esterase activity	Interproscan
GO:0004806 all species →	Molecular Function	triacylglycerol lipase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019433 all species →	Biological Process	triglyceride catabolic process	Interproscan
GO:0008203 all species →	Biological Process	cholesterol metabolic process	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0016298 all species →	Molecular Function	lipase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07188	LIPE, HSL; hormone-sensitive lipase	EC:3.1.1.79	Thermogenesis	ko04714	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.