Gene detail

Detailed information of evm.model.Ap8.2451 in Astrangia poculata

Genomic Location: Ap8:26748851...26763830
NR annotation: XP_020602439.1, neural cell adhesion molecule 1-like isoform X6 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2451

atggtgaagttactgttggtaatcggagctgttcttgcggtgaccattagtcgcacggaaggaacagtaaccgtgcccattcccacaatcaaggtcacgccaggtagaaacgtgcaattttcatgtcaggtaacagcaggagaaagctttgtggcttggataacaccagccaaagcagcacgaccaggaaagcctggtataccaagtgtaagcatcacaacatcacagacaacaggcaggagaagaatcgcagtgtctggaaacacatatcaactattaatactcagtgtgacagtggatgatggtggtgattacgtttgcgaaggatcaagaaacactgcagttttcactcttcaagttgactcgtaccatgtagatgaggtttttggagtcacagtcgatatgattagggatgggtctagtctctccagtagcagaaaaagtgtagttggtacagccgtcggtaatgtaggggcaagtaacacatcggactttgccgcatctaaaggatcccttggatacgttgttacaacagcaaatgttgatttagaacaagaaatccatcttggtaggaaagcagtaataaaactagatgtgtcttcgtatccactaccaacttatgagtggaaaaaagattggaaaccactgaccttccctacacaaggcaaaacaattgacccaaacactggctccataaccatcgacaatgtccaactgagtgatcaaggaaactacacttgcaaagtcacatttggtacacataccgatgttaagattgaagtcatggttattgatccacctctgagtattaacaaggaggcatctccgacaccagtgtactctatcgtggggaacagaaaacctgttacggtcacgtgctcgttttatggaaagccggtacccacagtgataatggttgctgaaaatggcacagagattgcaagaggaaacagcttagcatcttatgtgttcactactacaactgaaaatgactttggaaagtttaactgttctgcagagaatcctcatggaaaggctgaatatatggttgagttaagaaaagcagtggccccaggaccaccccgtaatgtggcagcaaacaagactggtaaagaaatcactcttaactggcagcctccattggacaatggtggcatggagatcgtcagttacatcataacagtactttcaaacggcaacctgcttcacacagaaaccactaatggaagcgcagttgaacgcaacattggctacgaattcatgccaaagacaacatatgaagtaagacttaaggcacgtagtgaagctggatttggaagagaagagagtgtatttgtcacaattaacaagtacatgtattgtacaactagaaagccgttcatcaccaacaaagaagttgaagttgacacagacttcactgtaacttggtctgcaccacgaaacgatagcgacaataacagcactaagtacagactggagtggaggaaaaaaccaataactaatcacaccaaactggataaacaggaaaatattaatgagactcgattcaggattactggtcttgagcataatgcggagtatgaggtcagactttatgctgtctacagatacggacttagtaagccagatgtcatgacattcaagacaaaagttggaaggccaactgagattttaaacctccaagccgtgtcttcctgcaacagtatcacacttacatggaagcaacccaatgatgaaagaggcatgcccatcaacaaatatgtcttgaatcgtacatcagattatgaagacattactcatgatatttctggggataatacatcatataccatcaatggcctgaagtataacactaaatacaacatcacattgcgagccagtaacaagggagaatggggtcccacaagcagtgtggaagtaaagaccacaaaatactgtgcacccgggcgaccagtcatatcttcgccttcgaattcatccactttgctgaccagagataccttcacactcaagtggcggcgccctgaggagactgggggcgatgatgacatcacttacaccgtgcgatacagcgcggtgagcgataagaactccagcctttggatcacgaaaacaattaccactaaaaggctgcagctcaagatcaccaggcttgataacaaggtccagtacaagtttgaggtgaccgctaaaaacaaaggtggagaaagcagtcctgacgagagattcattcagacaaacttcactggagaaggcagttcacagtctcgcctcgtgtccagtgcctttctgacaatcttggttggtggcctgtctcttctgctttga

Transcript

evm.model.Ap8.2451

ATGGTGAAGTTACTGTTGGTAATCGGAGCTGTTCTTGCGGTGACCATTAGTCGCACGGAAGGAACAGTAACCGTGCCCATTCCCACAATCAAGGTCACGCCAGGTAGAAACGTGCAATTTTCATGTCAGGTAACAGCAGGAGAAAGCTTTGTGGCTTGGATAACACCAGCCAAAGCAGCACGACCAGGAAAGCCTGGTATACCAAGTGTAAGCATCACAACATCACAGACAACAGGCAGGAGAAGAATCGCAGTGTCTGGAAACACATATCAACTATTAATACTCAGTGTGACAGTGGATGATGGTGGTGATTACGTTTGCGAAGGATCAAGAAACACTGCAGTTTTCACTCTTCAAGTTGACTCGTACCATGTAGATGAGGTTTTTGGAGTCACAGTCGATATGATTAGGGATGGGTCTAGTCTCTCCAGTAGCAGAAAAAGTGTAGTTGGTACAGCCGTCGGTAATGTAGGGGCAAGTAACACATCGGACTTTGCCGCATCTAAAGGATCCCTTGGATACGTTGTTACAACAGCAAATGTTGATTTAGAACAAGAAATCCATCTTGGTAGGAAAGCAGTAATAAAACTAGATGTGTCTTCGTATCCACTACCAACTTATGAGTGGAAAAAAGATTGGAAACCACTGACCTTCCCTACACAAGGCAAAACAATTGACCCAAACACTGGCTCCATAACCATCGACAATGTCCAACTGAGTGATCAAGGAAACTACACTTGCAAAGTCACATTTGGTACACATACCGATGTTAAGATTGAAGTCATGGTTATTGATCCACCTCTGAGTATTAACAAGGAGGCATCTCCGACACCAGTGTACTCTATCGTGGGGAACAGAAAACCTGTTACGGTCACGTGCTCGTTTTATGGAAAGCCGGTACCCACAGTGATAATGGTTGCTGAAAATGGCACAGAGATTGCAAGAGGAAACAGCTTAGCATCTTATGTGTTCACTACTACAACTGAAAATGACTTTGGAAAGTTTAACTGTTCTGCAGAGAATCCTCATGGAAAGGCTGAATATATGGTTGAGTTAAGAAAAGCAGTGGCCCCAGGACCACCCCGTAATGTGGCAGCAAACAAGACTGGTAAAGAAATCACTCTTAACTGGCAGCCTCCATTGGACAATGGTGGCATGGAGATCGTCAGTTACATCATAACAGTACTTTCAAACGGCAACCTGCTTCACACAGAAACCACTAATGGAAGCGCAGTTGAACGCAACATTGGCTACGAATTCATGCCAAAGACAACATATGAAGTAAGACTTAAGGCACGTAGTGAAGCTGGATTTGGAAGAGAAGAGAGTGTATTTGTCACAATTAACAAGTACATGTATTGTACAACTAGAAAGCCGTTCATCACCAACAAAGAAGTTGAAGTTGACACAGACTTCACTGTAACTTGGTCTGCACCACGAAACGATAGCGACAATAACAGCACTAAGTACAGACTGGAGTGGAGGAAAAAACCAATAACTAATCACACCAAACTGGATAAACAGGAAAATATTAATGAGACTCGATTCAGGATTACTGGTCTTGAGCATAATGCGGAGTATGAGGTCAGACTTTATGCTGTCTACAGATACGGACTTAGTAAGCCAGATGTCATGACATTCAAGACAAAAGTTGGAAGGCCAACTGAGATTTTAAACCTCCAAGCCGTGTCTTCCTGCAACAGTATCACACTTACATGGAAGCAACCCAATGATGAAAGAGGCATGCCCATCAACAAATATGTCTTGAATCGTACATCAGATTATGAAGACATTACTCATGATATTTCTGGGGATAATACATCATATACCATCAATGGCCTGAAGTATAACACTAAATACAACATCACATTGCGAGCCAGTAACAAGGGAGAATGGGGTCCCACAAGCAGTGTGGAAGTAAAGACCACAAAATACTGTGCACCCGGGCGACCAGTCATATCTTCGCCTTCGAATTCATCCACTTTGCTGACCAGAGATACCTTCACACTCAAGTGGCGGCGCCCTGAGGAGACTGGGGGCGATGATGACATCACTTACACCGTGCGATACAGCGCGGTGAGCGATAAGAACTCCAGCCTTTGGATCACGAAAACAATTACCACTAAAAGGCTGCAGCTCAAGATCACCAGGCTTGATAACAAGGTCCAGTACAAGTTTGAGGTGACCGCTAAAAACAAAGGTGGAGAAAGCAGTCCTGACGAGAGATTCATTCAGACAAACTTCACTGGAGAAGGCAGTTCACAGTCTCGCCTCGTGTCCAGTGCCTTTCTGACAATCTTGGTTGGTGGCCTGTCTCTTCTGCTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WZ42	Titin OS=Homo sapiens OX=9606 GN=TTN PE=1 SV=4
A2ASS6	Titin OS=Mus musculus OX=10090 GN=Ttn PE=1 SV=1
O15394	Neural cell adhesion molecule 2 OS=Homo sapiens OX=9606 GN=NCAM2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000948 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR050964 all species →	Family	Striated Muscle Structural and Regulatory Protein	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13817 all species →	TITIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.2451.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.