Gene detail

Detailed information of evm.model.Ap8.2484 in Astrangia poculata

Genomic Location: Ap8:27134124...27154014
NR annotation: KAJ7333149.1, Hypoxia up-regulated protein 1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2484

atgttaattagaaagcctgggacgatgttatttggcgcagccgtggtattcttgtcctgttttgtgttgtcatcagatggtttagctgttatgtctgtagatcttggaagccagttcatgaaagtagccatagtaaagcctggtgtaccaatggaaattgtactaaaccaggagtcaagaagaaaaactccagttgctgtttcactcagggataatgagcgattgttcagtgatggagccttgacaacgtctgtgaagtatccaaagtcgtcttatatttacgtccaggatgttctgggtaaaaagtttaacaatccactggtacaacaatacaaacaaagatttccgtggtatgatctcgaggaagataaagagacaggaactgttatttacagacacaatagtgagacaacctttactccagaggaaattcttggcatggtactaaatcattctagaatcattgctgaacaatttgctgatcatcctatgaaagatgtcgtcattacagttccttcctttttcaaccaagctgaacggcgatctgtaatacgagctgcaaagctggtcgggttaaatgtgctgcagttgatgaatgaaaacacagcagttgcacttcattatggtgtgttccgtcgtgcatctttcaacaacactgagagatttatcatgttctacgacatgggagcaacaagcacagtagctaccattgtgggttatagtacagtaaaaaccaaggacagggggatcacagaaacagctcctcaactggttgtcaagggagttgggtttgatcgcactctgggaggtcatgccttggaaatgcttatgagggatcatcttgtaaaactatttaaggagaagaacaagccacaaggtgatgtcacccagtctccacgggccatggcaaaatttctcaaagaagctgcacgagtaaaacaagtgttgagcgctaactctgagatttttgcacagattgagggtgcatttgaggaaaaggacttccgtgcaaaggttacgcgggaagaatttgaagagatgtgcgctgatttattgaagagagtcccgggccctgtggagcaggctctgaaatcttcagccattccattggatgaaattgaaagtgttattcttgtgggtggaggaacacgagtaccaaaggttcaagaaatacttctgaaagctgttaaaaagtctgaacttggaaagaatgtgaacacagatgaagctgctgctttgggtgctgtataccaagctgcaaatctaggaaaaggatttaaagtgaagaaatttctggtcaaggatgctaatgtgtacccaatacaggtttcctttgaccgagttaacaaggcagaggatggtacagagagtgtgaaacacgtgaagcgcatgttgtaccaccgaatgaatgtcgtgccacagaagaaagtgatgacattcaacaggcatacggatgactttcaattccatgctagttacactgagttggatttcttgactgaggaggagaaaagtatgcttggatcagtgaatttgacgtcagtcagtgtgtgtttattggacaagcacacccctaaaggagagacaaagggtatcaaggcattcttcaggatggacgaaaatggaattttgaacctggagaaggtggagtctgtgtttgaaaagccggaggaaaaacctgaggaagagcagtcaacatttgcaaaaatcggaagtaaaatttcaagcttctttggcagctcaaaagaagaggagaataaagaaagcaaagtagaggaaggagataaatcagacgaagcagacagtgaaaaaactgacaaggagaaacctgaagagggagaaccaaaagctaaagaagatgaaaaatccgaggagaagccggcagagaaagaagaggagaaaacagaacagaaagaaggagaaaagaaggaagaagagaaagagaaaaaagaggacaaggaggaaaaggacaaggaacaagaagaaaagaaagcggatgagaaagaaaaagagcaagaaaagaaagaagataaggaggacaagaaagaagaccaactgacaagaaaaagatga

Transcript

evm.model.Ap8.2484

ATGTTAATTAGAAAGCCTGGGACGATGTTATTTGGCGCAGCCGTGGTATTCTTGTCCTGTTTTGTGTTGTCATCAGATGGTTTAGCTGTTATGTCTGTAGATCTTGGAAGCCAGTTCATGAAAGTAGCCATAGTAAAGCCTGGTGTACCAATGGAAATTGTACTAAACCAGGAGTCAAGAAGAAAAACTCCAGTTGCTGTTTCACTCAGGGATAATGAGCGATTGTTCAGTGATGGAGCCTTGACAACGTCTGTGAAGTATCCAAAGTCGTCTTATATTTACGTCCAGGATGTTCTGGGTAAAAAGTTTAACAATCCACTGGTACAACAATACAAACAAAGATTTCCGTGGTATGATCTCGAGGAAGATAAAGAGACAGGAACTGTTATTTACAGACACAATAGTGAGACAACCTTTACTCCAGAGGAAATTCTTGGCATGGTACTAAATCATTCTAGAATCATTGCTGAACAATTTGCTGATCATCCTATGAAAGATGTCGTCATTACAGTTCCTTCCTTTTTCAACCAAGCTGAACGGCGATCTGTAATACGAGCTGCAAAGCTGGTCGGGTTAAATGTGCTGCAGTTGATGAATGAAAACACAGCAGTTGCACTTCATTATGGTGTGTTCCGTCGTGCATCTTTCAACAACACTGAGAGATTTATCATGTTCTACGACATGGGAGCAACAAGCACAGTAGCTACCATTGTGGGTTATAGTACAGTAAAAACCAAGGACAGGGGGATCACAGAAACAGCTCCTCAACTGGTTGTCAAGGGAGTTGGGTTTGATCGCACTCTGGGAGGTCATGCCTTGGAAATGCTTATGAGGGATCATCTTGTAAAACTATTTAAGGAGAAGAACAAGCCACAAGGTGATGTCACCCAGTCTCCACGGGCCATGGCAAAATTTCTCAAAGAAGCTGCACGAGTAAAACAAGTGTTGAGCGCTAACTCTGAGATTTTTGCACAGATTGAGGGTGCATTTGAGGAAAAGGACTTCCGTGCAAAGGTTACGCGGGAAGAATTTGAAGAGATGTGCGCTGATTTATTGAAGAGAGTCCCGGGCCCTGTGGAGCAGGCTCTGAAATCTTCAGCCATTCCATTGGATGAAATTGAAAGTGTTATTCTTGTGGGTGGAGGAACACGAGTACCAAAGGTTCAAGAAATACTTCTGAAAGCTGTTAAAAAGTCTGAACTTGGAAAGAATGTGAACACAGATGAAGCTGCTGCTTTGGGTGCTGTATACCAAGCTGCAAATCTAGGAAAAGGATTTAAAGTGAAGAAATTTCTGGTCAAGGATGCTAATGTGTACCCAATACAGGTTTCCTTTGACCGAGTTAACAAGGCAGAGGATGGTACAGAGAGTGTGAAACACGTGAAGCGCATGTTGTACCACCGAATGAATGTCGTGCCACAGAAGAAAGTGATGACATTCAACAGGCATACGGATGACTTTCAATTCCATGCTAGTTACACTGAGTTGGATTTCTTGACTGAGGAGGAGAAAAGTATGCTTGGATCAGTGAATTTGACGTCAGTCAGTGTGTGTTTATTGGACAAGCACACCCCTAAAGGAGAGACAAAGGGTATCAAGGCATTCTTCAGGATGGACGAAAATGGAATTTTGAACCTGGAGAAGGTGGAGTCTGTGTTTGAAAAGCCGGAGGAAAAACCTGAGGAAGAGCAGTCAACATTTGCAAAAATCGGAAGTAAAATTTCAAGCTTCTTTGGCAGCTCAAAAGAAGAGGAGAATAAAGAAAGCAAAGTAGAGGAAGGAGATAAATCAGACGAAGCAGACAGTGAAAAAACTGACAAGGAGAAACCTGAAGAGGGAGAACCAAAAGCTAAAGAAGATGAAAAATCCGAGGAGAAGCCGGCAGAGAAAGAAGAGGAGAAAACAGAACAGAAAGAAGGAGAAAAGAAGGAAGAAGAGAAAGAGAAAAAAGAGGACAAGGAGGAAAAGGACAAGGAACAAGAAGAAAAGAAAGCGGATGAGAAAGAAAAAGAGCAAGAAAAGAAAGAAGATAAGGAGGACAAGAAAGAAGACCAACTGACAAGAAAAAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZUW2	Hypoxia up-regulated protein 1 OS=Danio rerio OX=7955 GN=hyou1 PE=2 SV=1
Q566I3	Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus laevis OX=8355 GN=hyou1 PE=1 SV=2
Q0VA61	Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus tropicalis OX=8364 GN=hyou1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR050451 all species →	Family	Heat Shock Protein 70 (HSP70)	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45639 all species →	HSC70CB, ISOFORM G-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0034663 all species →	Cellular Component	endoplasmic reticulum chaperone complex	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09486	HYOU1; hypoxia up-regulated 1	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.