Gene detail

Detailed information of evm.model.Ap8.2501 in Astrangia poculata

Genomic Location: Ap8:27269684...27275023
NR annotation: KAJ7333166.1, Nuclear cap-binding protein subunit 2 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q177H0	Nuclear cap-binding protein subunit 2 OS=Aedes aegypti OX=7159 GN=Cbp20 PE=3 SV=1
B7P877	Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1
B4NB54	Nuclear cap-binding protein subunit 2 OS=Drosophila willistoni OX=7260 GN=Cbp20 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008506 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR027157 all species →	Family	Nuclear cap-binding protein subunit 2	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034148 all species →	Domain	NCBP2, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18847 all species →	20 KD NUCLEAR CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005846 all species →	Cellular Component	nuclear cap binding complex	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12883	NCBP2, CBP20; nuclear cap-binding protein subunit 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.