Genomic Location: Ap8:2507945...2526813
NR annotation: XP_020624394.1, origin recognition complex subunit 3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.251 |
| Transcript |
| evm.model.Ap8.251 |
| Protein |
| evm.model.Ap8.251 |
| UniProt accession | Description |
|---|---|
| Q9UBD5 | Origin recognition complex subunit 3 OS=Homo sapiens OX=9606 GN=ORC3 PE=1 SV=1 |
| Q5DJU3 | Origin recognition complex subunit 3 OS=Spermophilus citellus OX=9997 GN=ORC3 PE=2 SV=1 |
| Q4R180 | Origin recognition complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Orc3 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003984 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18137 all species → | ORC_WH_C | Origin recognition complex winged helix C-terminal | Domain | Interproscan |
| PF19675 all species → | ORC3_ins | Origin recognition complex subunit 3 insertion domain | Family | Interproscan |
| PF07034 all species → | ORC3_N | Origin recognition complex (ORC) subunit 3 N-terminus | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040855 all species → | Domain | Origin recognition complex subunit 3, winged helix C-terminal | Interproscan |
| IPR045663 all species → | Domain | Origin recognition complex subunit 3, insertion domain | Interproscan |
| IPR020795 all species → | Family | Origin recognition complex, subunit 3 | Interproscan |
| IPR045667 all species → | Domain | Origin recognition complex subunit 3, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12748 all species → | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003688 all species → | Molecular Function | DNA replication origin binding | Interproscan |
| GO:0005656 all species → | Cellular Component | nuclear pre-replicative complex | Interproscan |
| GO:0005664 all species → | Cellular Component | nuclear origin of replication recognition complex | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006270 all species → | Biological Process | DNA replication initiation | Interproscan |
| GO:0031261 all species → | Cellular Component | DNA replication preinitiation complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02605 | ORC3; origin recognition complex subunit 3 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of evm.model.Ap8.251 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
