Detailed information of evm.model.Ap8.2538 in Astrangia poculata

Genomic Location: Ap8:27725193...27730415
NR annotation: XP_020632633.1, integumentary mucin C.1-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q63467Trefoil factor 1 OS=Rattus norvegicus OX=10116 GN=Tff1 PE=3 SV=1
Q00222Putative gastrointestinal growth factor xP1 OS=Xenopus laevis OX=8355 GN=p1 PE=2 SV=1
Q05049Integumentary mucin C.1 (Fragment) OS=Xenopus laevis OX=8355 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001045 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00088
all species →		TrefoilTrefoil (P-type) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044913
all species →		Homologous_superfamilyP-type trefoil domain superfamilyInterproscan
IPR000519
all species →		DomainP-type trefoil domainInterproscan
IPR017957
all species →		Conserved_siteP-type trefoil, conserved siteInterproscan
IPR017994
all species →		FamilyP-type trefoil, chordataInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13826
all species →		INTESTINAL TREFOIL FACTOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap8.2538.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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