Gene detail

Detailed information of evm.model.Ap8.2565 in Astrangia poculata

Genomic Location: Ap8:28075189...28080683
NR annotation: XP_044180053.1, uncharacterized protein LOC122961504 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2565

atgacaactttcgactttaacgcgtggtgtacgaccactcaattgaaagaagctaccgtagaagctctgaaaaaagaggatatcgatagcgaagcggctttaaaacttctgactgaaaaagacgtggaagagttggggctcagtgtaggacagaaacgcgtccttgaagcggccctgaagaagttaaagcttgaagagcaggcaaaaaccgaaccaggagacgtgaccgacccagtgaccacgaagtccttggcaaaagacggcgggctggaggagatcctcaagaaaattgaaggagctggctcactggaggactctcttctggccttaggaacgacagacctattccccgggaaaacgccagccgcgcaaaactcgtccacgctaaatagtactctacctagattggacaacgatccgcacgtgtttcttggccgacagcagcaaaaggcaataggaacgaaacaaggtgagaaaccattgttaattccagactttataaacctgggaacttatgacagtagcgaggaagagcaagagatcggaaacaattcaagcgggggaaaaataattttccgtgcaacaaagtcaaaacctaaactggaacaaatcaccctttctatgtgggtcgccgcaaactcgcgaattatgtatgagcttcttaaaaaaggaaaactgtccgcgaccacttccgacatcgcggattacttggcctacacagtcaaattcgcagagctcctcgagagtcacactctcgcctcggcactcatgtacgataacgagtaccgtaaattgcagtgcgagtatggatttcgctgggggagtgattcacagcaccttcataccaggtttctcgttaaacgtcgttcttcttcctggatacggaacctcggaaatgatcctgacaaaacctttatcattgatggactcacaaacggctttgagattattcctagcgaaactgtcttagagaaagcggaaactagcaactacaaatctgccaccgcaggccagttccgctataaagtagagaaacaaattcgcgaagagattagcaaaggcaattatgttgtagcacaagcaaaacctaccattgttagcgcacttggggccatccctaaaccacaatctgataaaatccgactcatacacgattgtagcagaccacagcactctaatgttaattcctatgcaacgacgcaacatttttcttacgtgactgtcgaacaagctgtatcaatgattaaacccaatgcctatcttgcaaaaattgacctaaagagtgcttatcgccacgtcccgatacacccctcgaactattctgcaactggactagcatggcagtttcacggcgaaaaccacattacgtatctgtacgacagcaaattaccctttggagcttccaaatcaccagaaatctttcaccgattaactcaagcagtcacgcgcatgatggccaagcgaggatttcacacaatcctagcgtatctcgatgatttccttattattggcgatagcaagtatgagtgcgaattagcttaccaggaacttatccaacttttaagcgaacttggttttagtatcaactgggagaaagcagtttctcctacccagcgattaacattcctaggaatagagattgacacagtgcttaggcaactttgtttgcccgaaagcaagctatgcgaactgcgacaattattaagcgagacattgattaagcgctcagtcacgaagcgagatctgcagagccttgttggcaagctaaactttgcggctcgggtggttttcggaggccgcacattcctgcggcggacaattgacgtcatgaacactttatcgcgacctcaccaccacatccgtgttaacaaacaattaagggacgatttatcgtggtgggcgagctttctgagtggcaaacattcttcattgattcggcgccagtttcttatgaagaattctccactgatgcgtgccctatcggtggtggcgggttctttcaaggcgattggtgcagtacatgctcaggagcagctactccaagaggaattgagaaagtaccgtcgccacgcctttgcgctatcaacgtcagctacatacaagtcgcaattacgagcgttccttcgcttctgtctattcttcggatacaccccggttccctgcagcgcaatacaccttcttcggtacatcgtgttcctcgcgagatctctgtccgctagcagcatccctaattatctcaacgtcgtacgtctattgcatctgcagtacgggtatcctaacccccttgaggagcctcttttcaaacaccagaaaaccctactcatgagaggtataaaacgtctacatggagcacaggtgtcgcaaaaactccctatcacacctgatgttctctacaaaatgcaatgtcatctaaactttgcctgctcgttcgacgcaaccttttgggcagcgtgtttggtcgcatttttctcgttcttccgcaaatcaaatctgttgccaccttcaaccgcaaaatttgacccccaacttcacctacgaaactgcgatgtaagattgtacccgtggggcattatactcgtcgtccgttggtctaaaacgattcaataccgaaatcgaacactcctggtcccagttcctaaagttgcccactcctcgttatgcccttggtcagcggtaactcgcgctttcaaactcgctggcgtatatcaaagcaacgagcatgcctcagcacccgcttttacataccgagagggtagcgcccttaaggcactaacatatgcctccttcaccaataaactgaaactaacactagataaatgcggtttggacagcgcgcgtttctctggacactccttcaggagagggggagctacttttgctttgcattgcggtgtacctagtgactatataaagctacaaggagactggaagtcaaatgcatatgaacgttatttagaccattcactgcgctacaaactcgaaactgttaaacagatgtgtgaaggtgatccggaatctgtcactctgattggccaaagctctggcggtacatctgagattgcactgcttgcatcgcctagtgctgctggacttttccatcgagcgattttaatgagtgcctcggccgtttttaacaagacatcggaagacgcggctcgtgacaacaagatcttcgtgaacaactccaaatgtgagagaagcagcccagcagcggagagaaaatgtttgtacaagttgagtcccaagcaaatacaggacgccattccatgggacgtgtacccattctggcgcatggcagatctaatgggtcttccaacaaaaaaccggtttgacgggactgtcgctgtggtggacaaaactgtcgtgtccgacccaactctcgttgccatggcaactggaaaagctaatgacgtaccccttatgattggaacaacggctcaagaaattgacattcagcctgtgatattgttcacgaactcgagctatggagtttaccgaaaacatgtcgaggaaaaactgcaacctcttctaggaaacgatgttagcaaggtgctaaacatgtataacgaaagcttggtcagaggaatgtattttctactgctagagatcagcctggataaaccgtcagaagtctgcaagctggtaacggaaggaggacagctcacaacgacgcggcagaaggcgataaatctcgcggatagaagcaaagacgagtggtcggctctacatctatgtgtacgagtcggacgagcttgcttgtcagaagatgcaaagagaattgactgtcagccgaaaagaagaaggcggattcggacgctaatttcgcagtattctcaagaggttctaaccaactag

Transcript

evm.model.Ap8.2565

ATGACAACTTTCGACTTTAACGCGTGGTGTACGACCACTCAATTGAAAGAAGCTACCGTAGAAGCTCTGAAAAAAGAGGATATCGATAGCGAAGCGGCTTTAAAACTTCTGACTGAAAAAGACGTGGAAGAGTTGGGGCTCAGTGTAGGACAGAAACGCGTCCTTGAAGCGGCCCTGAAGAAGTTAAAGCTTGAAGAGCAGGCAAAAACCGAACCAGGAGACGTGACCGACCCAGTGACCACGAAGTCCTTGGCAAAAGACGGCGGGCTGGAGGAGATCCTCAAGAAAATTGAAGGAGCTGGCTCACTGGAGGACTCTCTTCTGGCCTTAGGAACGACAGACCTATTCCCCGGGAAAACGCCAGCCGCGCAAAACTCGTCCACGCTAAATAGTACTCTACCTAGATTGGACAACGATCCGCACGTGTTTCTTGGCCGACAGCAGCAAAAGGCAATAGGAACGAAACAAGGTGAGAAACCATTGTTAATTCCAGACTTTATAAACCTGGGAACTTATGACAGTAGCGAGGAAGAGCAAGAGATCGGAAACAATTCAAGCGGGGGAAAAATAATTTTCCGTGCAACAAAGTCAAAACCTAAACTGGAACAAATCACCCTTTCTATGTGGGTCGCCGCAAACTCGCGAATTATGTATGAGCTTCTTAAAAAAGGAAAACTGTCCGCGACCACTTCCGACATCGCGGATTACTTGGCCTACACAGTCAAATTCGCAGAGCTCCTCGAGAGTCACACTCTCGCCTCGGCACTCATGTACGATAACGAGTACCGTAAATTGCAGTGCGAGTATGGATTTCGCTGGGGGAGTGATTCACAGCACCTTCATACCAGGTTTCTCGTTAAACGTCGTTCTTCTTCCTGGATACGGAACCTCGGAAATGATCCTGACAAAACCTTTATCATTGATGGACTCACAAACGGCTTTGAGATTATTCCTAGCGAAACTGTCTTAGAGAAAGCGGAAACTAGCAACTACAAATCTGCCACCGCAGGCCAGTTCCGCTATAAAGTAGAGAAACAAATTCGCGAAGAGATTAGCAAAGGCAATTATGTTGTAGCACAAGCAAAACCTACCATTGTTAGCGCACTTGGGGCCATCCCTAAACCACAATCTGATAAAATCCGACTCATACACGATTGTAGCAGACCACAGCACTCTAATGTTAATTCCTATGCAACGACGCAACATTTTTCTTACGTGACTGTCGAACAAGCTGTATCAATGATTAAACCCAATGCCTATCTTGCAAAAATTGACCTAAAGAGTGCTTATCGCCACGTCCCGATACACCCCTCGAACTATTCTGCAACTGGACTAGCATGGCAGTTTCACGGCGAAAACCACATTACGTATCTGTACGACAGCAAATTACCCTTTGGAGCTTCCAAATCACCAGAAATCTTTCACCGATTAACTCAAGCAGTCACGCGCATGATGGCCAAGCGAGGATTTCACACAATCCTAGCGTATCTCGATGATTTCCTTATTATTGGCGATAGCAAGTATGAGTGCGAATTAGCTTACCAGGAACTTATCCAACTTTTAAGCGAACTTGGTTTTAGTATCAACTGGGAGAAAGCAGTTTCTCCTACCCAGCGATTAACATTCCTAGGAATAGAGATTGACACAGTGCTTAGGCAACTTTGTTTGCCCGAAAGCAAGCTATGCGAACTGCGACAATTATTAAGCGAGACATTGATTAAGCGCTCAGTCACGAAGCGAGATCTGCAGAGCCTTGTTGGCAAGCTAAACTTTGCGGCTCGGGTGGTTTTCGGAGGCCGCACATTCCTGCGGCGGACAATTGACGTCATGAACACTTTATCGCGACCTCACCACCACATCCGTGTTAACAAACAATTAAGGGACGATTTATCGTGGTGGGCGAGCTTTCTGAGTGGCAAACATTCTTCATTGATTCGGCGCCAGTTTCTTATGAAGAATTCTCCACTGATGCGTGCCCTATCGGTGGTGGCGGGTTCTTTCAAGGCGATTGGTGCAGTACATGCTCAGGAGCAGCTACTCCAAGAGGAATTGAGAAAGTACCGTCGCCACGCCTTTGCGCTATCAACGTCAGCTACATACAAGTCGCAATTACGAGCGTTCCTTCGCTTCTGTCTATTCTTCGGATACACCCCGGTTCCCTGCAGCGCAATACACCTTCTTCGGTACATCGTGTTCCTCGCGAGATCTCTGTCCGCTAGCAGCATCCCTAATTATCTCAACGTCGTACGTCTATTGCATCTGCAGTACGGGTATCCTAACCCCCTTGAGGAGCCTCTTTTCAAACACCAGAAAACCCTACTCATGAGAGGTATAAAACGTCTACATGGAGCACAGGTGTCGCAAAAACTCCCTATCACACCTGATGTTCTCTACAAAATGCAATGTCATCTAAACTTTGCCTGCTCGTTCGACGCAACCTTTTGGGCAGCGTGTTTGGTCGCATTTTTCTCGTTCTTCCGCAAATCAAATCTGTTGCCACCTTCAACCGCAAAATTTGACCCCCAACTTCACCTACGAAACTGCGATGTAAGATTGTACCCGTGGGGCATTATACTCGTCGTCCGTTGGTCTAAAACGATTCAATACCGAAATCGAACACTCCTGGTCCCAGTTCCTAAAGTTGCCCACTCCTCGTTATGCCCTTGGTCAGCGGTAACTCGCGCTTTCAAACTCGCTGGCGTATATCAAAGCAACGAGCATGCCTCAGCACCCGCTTTTACATACCGAGAGGGTAGCGCCCTTAAGGCACTAACATATGCCTCCTTCACCAATAAACTGAAACTAACACTAGATAAATGCGGTTTGGACAGCGCGCGTTTCTCTGGACACTCCTTCAGGAGAGGGGGAGCTACTTTTGCTTTGCATTGCGGTGTACCTAGTGACTATATAAAGCTACAAGGAGACTGGAAGTCAAATGCATATGAACGTTATTTAGACCATTCACTGCGCTACAAACTCGAAACTGTTAAACAGATGTGTGAAGGTGATCCGGAATCTGTCACTCTGATTGGCCAAAGCTCTGGCGGTACATCTGAGATTGCACTGCTTGCATCGCCTAGTGCTGCTGGACTTTTCCATCGAGCGATTTTAATGAGTGCCTCGGCCGTTTTTAACAAGACATCGGAAGACGCGGCTCGTGACAACAAGATCTTCGTGAACAACTCCAAATGTGAGAGAAGCAGCCCAGCAGCGGAGAGAAAATGTTTGTACAAGTTGAGTCCCAAGCAAATACAGGACGCCATTCCATGGGACGTGTACCCATTCTGGCGCATGGCAGATCTAATGGGTCTTCCAACAAAAAACCGGTTTGACGGGACTGTCGCTGTGGTGGACAAAACTGTCGTGTCCGACCCAACTCTCGTTGCCATGGCAACTGGAAAAGCTAATGACGTACCCCTTATGATTGGAACAACGGCTCAAGAAATTGACATTCAGCCTGTGATATTGTTCACGAACTCGAGCTATGGAGTTTACCGAAAACATGTCGAGGAAAAACTGCAACCTCTTCTAGGAAACGATGTTAGCAAGGTGCTAAACATGTATAACGAAAGCTTGGTCAGAGGAATGTATTTTCTACTGCTAGAGATCAGCCTGGATAAACCGTCAGAAGTCTGCAAGCTGGTAACGGAAGGAGGACAGCTCACAACGACGCGGCAGAAGGCGATAAATCTCGCGGATAGAAGCAAAGACGAGTGGTCGGCTCTACATCTATGTGTACGAGTCGGACGAGCTTGCTTGTCAGAAGATGCAAAGAGAATTGACTGTCAGCCGAAAAGAAGAAGGCGGATTCGGACGCTAATTTCGCAGTATTCTCAAGAGGTTCTAACCAACTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P37967	Para-nitrobenzyl esterase OS=Bacillus subtilis (strain 168) OX=224308 GN=pnbA PE=1 SV=2
Q04791	Fatty acyl-CoA hydrolase precursor, medium chain OS=Anas platyrhynchos OX=8839 PE=1 SV=1
Q8R0W5	Carboxylesterase 4A OS=Mus musculus OX=10090 GN=Ces4a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002082 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00135 all species →	COesterase	Carboxylesterase family	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR002018 all species →	Domain	Carboxylesterase, type B	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.2565.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.