Gene detail

Detailed information of evm.model.Ap8.2712 in Astrangia poculata

Genomic Location: Ap8:29475826...29489261
NR annotation: XP_027045315.1, propionyl-CoA carboxylase alpha chain, mitochondrial-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2712

atggctggtagaggtatcgggtttggattgtcctctttattgcgaggatctcgcaggccctgctgccagatctaccttagaggagtgcagacttcggcaattccaaaggatcagctttttgacaagattctgattgccaaccggggagagatagcatgcagggtcatgaaaacatgcaaacgtcttggaatcaaaactgttgcagtgtatagtgaagcagacgcaaatgctcttcatgtgaaaactgctgacgaagcattttgtgttggtcctccaccaaccaatcagagttatctaaacatggaggccataatggaggcaataaacaccactggagcacaagcggttcacccaggatatggttttctatcagagaacagcaagtttgtttctatgctggaaaaagctggtgttgccttcattggtccaaaagcatcagctatgcaagccatgggtgataaaatccaaagtaaactgatcggcaagaaggctggcgtgaacatcatccctgggtttgaaggagttgtcaaggatgacgaggatgcagtcagaatagcaaatgaaataggttacccagtcatgatcaaagcttctgctggtggaggaggcaaaggaatgagaatagcttggaatgatgaagaaacaaaggaaggatttcgtctctcgtctcaagaagctagttccagctttggagatgacaggttgttagtggagaagtttattgacaatccaagacacattgagattcaggtacttggagacaagtatggaaatgctgtttatgtgaatgaaagagaatgttctatccagagacgaaaccagaaggtcattgaagaatcaccgagcccctttgtggacccagatatgagaagggcaatgggtgaacaagctgttgcgcttgcaaaagaggttggatacgactctgctggtactgtggagtgtttggtcgactcacagaagaacttctacttcttggaaatgaacactcgtttacaggtggaacatcctatcactgagatggtagctggaattgatcttgtggaacacatgatcagagttgctgctggtcatcccctgagcatcacacaggctgatattccaatcaatggctgggcagtggaatgcagagtgtatgctgaggatccatacaagaattttggtttaccctcgattggaaggttgtacaagtacattgagccaacacatctacctaatgttcgttgtgacagtggcatcattgaaggcagtgaaattagtatttactatgactccatgatatcgaagttggtaacacatgcaccaaccagaaatgaagcccttgatgtgatgaataaagccttggattcttatgttatcagaggtgttacatacaatgtttcacttcttcgtgatgtgctcaaccatcctaaattccgccttggtgacatcactactaagttcctcccccaggagtatccaaaaggatttaaaggtcatagtgacagaggaagaaagatgatgaattgttgcataactgcttcttttatttgtgaccaaagagcaatgaaagatactggtttcaagctcaatgctgtgagtaagagtcaggcctcctgggatcttgtgattactctgcagaaggcagattatccaatgacggtgacgtcaaaaccagatgggagtttccaggtcaccatcgacggaagacaagtagattttagcacttcatctggcttgtcagatccagtatttggagccaacatcaatggaaatgacgttctgttacagacgttgaagaaagaaggaaatctctttaacatccagcattacggaactacgtacaagctccgagtgcacacgaaagaacagtacgagtacatgaagtacatgccagagaaagtagaggaggacatgtctccatacctaaagtcccccatgcctgggacggtagtgtcagttgctgtcagtgttggagaaacggttcatgaaggacaggaattagcggtagtagaagccatgaagatgcagaacagtttgcatgccggtacctctggcacagtgaagacagtaaatttcaagcctggagataaagtcgctgaaggcgatatcatggtagaaatcgagcaccatcctgaccaataa

Transcript

evm.model.Ap8.2712

ATGGCTGGTAGAGGTATCGGGTTTGGATTGTCCTCTTTATTGCGAGGATCTCGCAGGCCCTGCTGCCAGATCTACCTTAGAGGAGTGCAGACTTCGGCAATTCCAAAGGATCAGCTTTTTGACAAGATTCTGATTGCCAACCGGGGAGAGATAGCATGCAGGGTCATGAAAACATGCAAACGTCTTGGAATCAAAACTGTTGCAGTGTATAGTGAAGCAGACGCAAATGCTCTTCATGTGAAAACTGCTGACGAAGCATTTTGTGTTGGTCCTCCACCAACCAATCAGAGTTATCTAAACATGGAGGCCATAATGGAGGCAATAAACACCACTGGAGCACAAGCGGTTCACCCAGGATATGGTTTTCTATCAGAGAACAGCAAGTTTGTTTCTATGCTGGAAAAAGCTGGTGTTGCCTTCATTGGTCCAAAAGCATCAGCTATGCAAGCCATGGGTGATAAAATCCAAAGTAAACTGATCGGCAAGAAGGCTGGCGTGAACATCATCCCTGGGTTTGAAGGAGTTGTCAAGGATGACGAGGATGCAGTCAGAATAGCAAATGAAATAGGTTACCCAGTCATGATCAAAGCTTCTGCTGGTGGAGGAGGCAAAGGAATGAGAATAGCTTGGAATGATGAAGAAACAAAGGAAGGATTTCGTCTCTCGTCTCAAGAAGCTAGTTCCAGCTTTGGAGATGACAGGTTGTTAGTGGAGAAGTTTATTGACAATCCAAGACACATTGAGATTCAGGTACTTGGAGACAAGTATGGAAATGCTGTTTATGTGAATGAAAGAGAATGTTCTATCCAGAGACGAAACCAGAAGGTCATTGAAGAATCACCGAGCCCCTTTGTGGACCCAGATATGAGAAGGGCAATGGGTGAACAAGCTGTTGCGCTTGCAAAAGAGGTTGGATACGACTCTGCTGGTACTGTGGAGTGTTTGGTCGACTCACAGAAGAACTTCTACTTCTTGGAAATGAACACTCGTTTACAGGTGGAACATCCTATCACTGAGATGGTAGCTGGAATTGATCTTGTGGAACACATGATCAGAGTTGCTGCTGGTCATCCCCTGAGCATCACACAGGCTGATATTCCAATCAATGGCTGGGCAGTGGAATGCAGAGTGTATGCTGAGGATCCATACAAGAATTTTGGTTTACCCTCGATTGGAAGGTTGTACAAGTACATTGAGCCAACACATCTACCTAATGTTCGTTGTGACAGTGGCATCATTGAAGGCAGTGAAATTAGTATTTACTATGACTCCATGATATCGAAGTTGGTAACACATGCACCAACCAGAAATGAAGCCCTTGATGTGATGAATAAAGCCTTGGATTCTTATGTTATCAGAGGTGTTACATACAATGTTTCACTTCTTCGTGATGTGCTCAACCATCCTAAATTCCGCCTTGGTGACATCACTACTAAGTTCCTCCCCCAGGAGTATCCAAAAGGATTTAAAGGTCATAGTGACAGAGGAAGAAAGATGATGAATTGTTGCATAACTGCTTCTTTTATTTGTGACCAAAGAGCAATGAAAGATACTGGTTTCAAGCTCAATGCTGTGAGTAAGAGTCAGGCCTCCTGGGATCTTGTGATTACTCTGCAGAAGGCAGATTATCCAATGACGGTGACGTCAAAACCAGATGGGAGTTTCCAGGTCACCATCGACGGAAGACAAGTAGATTTTAGCACTTCATCTGGCTTGTCAGATCCAGTATTTGGAGCCAACATCAATGGAAATGACGTTCTGTTACAGACGTTGAAGAAAGAAGGAAATCTCTTTAACATCCAGCATTACGGAACTACGTACAAGCTCCGAGTGCACACGAAAGAACAGTACGAGTACATGAAGTACATGCCAGAGAAAGTAGAGGAGGACATGTCTCCATACCTAAAGTCCCCCATGCCTGGGACGGTAGTGTCAGTTGCTGTCAGTGTTGGAGAAACGGTTCATGAAGGACAGGAATTAGCGGTAGTAGAAGCCATGAAGATGCAGAACAGTTTGCATGCCGGTACCTCTGGCACAGTGAAGACAGTAAATTTCAAGCCTGGAGATAAAGTCGCTGAAGGCGATATCATGGTAGAAATCGAGCACCATCCTGACCAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91ZA3	Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Mus musculus OX=10090 GN=Pcca PE=1 SV=2
P05165	Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Homo sapiens OX=9606 GN=PCCA PE=1 SV=4
P0DTA4	Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Sus scrofa OX=9823 GN=PCCA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02785 all species →	Biotin_carb_C	Biotin carboxylase C-terminal domain	Domain	Interproscan
PF00289 all species →	Biotin_carb_N	Biotin carboxylase, N-terminal domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF18140 all species →	PCC_BT	Propionyl-coenzyme A carboxylase BT domain	Domain	Interproscan
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011054 all species →	Homologous_superfamily	Rudiment single hybrid motif	Interproscan
IPR005482 all species →	Domain	Biotin carboxylase, C-terminal	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR050856 all species →	Family	Biotin-dependent Carboxylase Complex	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR005481 all species →	Domain	Biotin carboxylase-like, N-terminal domain	Interproscan
IPR011764 all species →	Domain	Biotin carboxylation domain	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR041265 all species →	Domain	Propionyl-coenzyme A carboxylase, BT domain	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR001882 all species →	Binding_site	Biotin-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18866 all species →	CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004658 all species →	Molecular Function	propionyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01965	PCCA, pccA; propionyl-CoA carboxylase alpha subunit	EC:6.4.1.3	Valine, leucine and isoleucine degradation	ko00280	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.