Detailed information of evm.model.Ap8.2847 in Astrangia poculata

Genomic Location: Ap8:30533741...30537673
NR annotation: XP_020632611.1, methylosome subunit pICln-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28678Methylosome subunit pICln OS=Oryctolagus cuniculus OX=9986 GN=CLNS1A PE=2 SV=2
P35521Methylosome subunit pICln OS=Canis lupus familiaris OX=9615 GN=CLNS1A PE=1 SV=1
Q61189Methylosome subunit pICln OS=Mus musculus OX=10090 GN=Clns1a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007727 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03517
all species →		VoldacsRegulator of volume decrease after cellular swellingDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039924
all species →		FamilyProtein ICln/Lot5/Saf5Interproscan
IPR003521
all species →		FamilyIClnInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21399
all species →		CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLNInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000387
all species →		Biological Processspliceosomal snRNP assemblyInterproscan
GO:0005681
all species →		Cellular Componentspliceosomal complexInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0034715
all species →		Cellular ComponentpICln-Sm protein complexInterproscan
GO:0045292
all species →		Biological ProcessmRNA cis splicing, via spliceosomeInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006821
all species →		Biological Processchloride transportInterproscan
GO:0006884
all species →		Biological Processcell volume homeostasisInterproscan
GO:0034709
all species →		Cellular ComponentmethylosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05019CLNS1A; chloride channel, nucleotide-sensitive, 1A-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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