Gene detail

Detailed information of evm.model.Ap8.2848 in Astrangia poculata

Genomic Location: Ap8:30538102...30551433
NR annotation: XP_020632603.1, pantothenate kinase 4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2848

atgggatctaaagctgcacagggcagtacttcgggctatgcaagaagtatttctttgcctgaggtatttcgaaaccttaaaactgctaagatttttgcagtagacattggtgggtctcttgccaaggtggcatacatgtctgaagtgagaaacattaggaaacggcattacagctttacttctttgagcaagttggttgatgaagaccaggagaaagggtctgacaaatgtgcagctggtgggcatatctatgagatcaaggacgatcaagaatctagcaaaagattacacttcattaaatttgaaaccaaatatattgaaatgtgtgtcaatttcatccaagagaacatcttatcagaagcatataaagagaaggcactcaaagccacaggtggtggagctcataaatacatggatttacttacaagtaaacttggtgtcagggttgataaagaagatgaaatagaatgtatcatcagaggcggcaactttctgttgaaaaacattgctgatgaagtgtttgagtatcataaagaacagagtcctccatacgtcttccaagaacttgatcattcagaaatatttccttacctcatagtcaacattggctctggagtcagtatgatcaaggtggaatctgagaacacgtttgagcgagtcggtggaaccagtatgggaggaggcacattctggggtctgggttctctacttacaagcgcaaagggtttcgacgagttgctagaactggcaaccaaaggccgtcaccaaaatgtggacatgttggtaaaagacatctacggtggcgcatacgatgctttgaagcttccaggagacttgactgcgagcagctttggcaagacagtgagatcaccgaaggacgatcaacattctgcttctcactttgccgaagcagatgtagcaaaaagtctgctacacatgatctgtaatgacattgggcagattgcctcactctatgcgaaactaaatggactgaagaaaatctacttcagcgggtatttcatcagaggaaacccggtgaccatgcacgctatctcctttggcatcaactactggtctaagggaagccagcaggcattatttctcagacacgaaggataccttggagccataggagcatttttgaaaggagctgaagaagatgtggactttacgttaagcaatctcgacgttttaacatggcgagaaaactacgcaggcagctcaggcctctcagctgcaaaacgttccgctgatctgatcaatactcggatagctgacggagttaggtatgatgtattggagatggaccaattcactcacacactagtcccattccctctcctcgcctctcacggtgactactatcccgacactcaagatctcactgttgacacagaagcaagagattactggctcaagtgctttgaggacgcattagacaaagtagttgatcgtgcagtagccagccaaccagacgccccagacgccaaagaaagagcagaaaagtttcgcaacaaatttcgacttcgcctcgatgttctcaagcaacaacctgcggcttatggaactttgaatgttcgtagtttgttggacgtgagagaacagtacctcaacgagtttagctttcctgatccttacgcagaggttaagcaagaagagaacgaggctgcgcttcttctgctgtccaagcgactcaaagaactagacgcgatgtcatgggaaaagcgacagctcgctctgattgaaggaataatagctggcaatgtttttgactggggtgctaaggaagttgcaaaactcatggaaggaggccaacttgacttcgaatcagctatgaaaaaattacaagctcggccctggttaaaagatgaccttgatgcctggattgaaaggtcaaagggccctcctcataaactagctgtcatatttgtggataacagtggcgtggatattatcttaggaatgtttccattcgtcagagaacttctttcacgtggaactaaggttgtcatggctgctaactcttatccagccctgaatgacgtcatgtacagtgaacttgtgatcttaacagaaaaagtagcagatttatgtccagaaataaggactgcatataaggaagaacgattagtccccatggaatcgggcatcggttcgccttgtttggattgcaggtatgcttatcttattcacatttcaccactaaatctaaatctcctcacttcagacaaggaaaaatattttgtttctacatgtaacaattag

Transcript

evm.model.Ap8.2848

ATGGGATCTAAAGCTGCACAGGGCAGTACTTCGGGCTATGCAAGAAGTATTTCTTTGCCTGAGGTATTTCGAAACCTTAAAACTGCTAAGATTTTTGCAGTAGACATTGGTGGGTCTCTTGCCAAGGTGGCATACATGTCTGAAGTGAGAAACATTAGGAAACGGCATTACAGCTTTACTTCTTTGAGCAAGTTGGTTGATGAAGACCAGGAGAAAGGGTCTGACAAATGTGCAGCTGGTGGGCATATCTATGAGATCAAGGACGATCAAGAATCTAGCAAAAGATTACACTTCATTAAATTTGAAACCAAATATATTGAAATGTGTGTCAATTTCATCCAAGAGAACATCTTATCAGAAGCATATAAAGAGAAGGCACTCAAAGCCACAGGTGGTGGAGCTCATAAATACATGGATTTACTTACAAGTAAACTTGGTGTCAGGGTTGATAAAGAAGATGAAATAGAATGTATCATCAGAGGCGGCAACTTTCTGTTGAAAAACATTGCTGATGAAGTGTTTGAGTATCATAAAGAACAGAGTCCTCCATACGTCTTCCAAGAACTTGATCATTCAGAAATATTTCCTTACCTCATAGTCAACATTGGCTCTGGAGTCAGTATGATCAAGGTGGAATCTGAGAACACGTTTGAGCGAGTCGGTGGAACCAGTATGGGAGGAGGCACATTCTGGGGTCTGGGTTCTCTACTTACAAGCGCAAAGGGTTTCGACGAGTTGCTAGAACTGGCAACCAAAGGCCGTCACCAAAATGTGGACATGTTGGTAAAAGACATCTACGGTGGCGCATACGATGCTTTGAAGCTTCCAGGAGACTTGACTGCGAGCAGCTTTGGCAAGACAGTGAGATCACCGAAGGACGATCAACATTCTGCTTCTCACTTTGCCGAAGCAGATGTAGCAAAAAGTCTGCTACACATGATCTGTAATGACATTGGGCAGATTGCCTCACTCTATGCGAAACTAAATGGACTGAAGAAAATCTACTTCAGCGGGTATTTCATCAGAGGAAACCCGGTGACCATGCACGCTATCTCCTTTGGCATCAACTACTGGTCTAAGGGAAGCCAGCAGGCATTATTTCTCAGACACGAAGGATACCTTGGAGCCATAGGAGCATTTTTGAAAGGAGCTGAAGAAGATGTGGACTTTACGTTAAGCAATCTCGACGTTTTAACATGGCGAGAAAACTACGCAGGCAGCTCAGGCCTCTCAGCTGCAAAACGTTCCGCTGATCTGATCAATACTCGGATAGCTGACGGAGTTAGGTATGATGTATTGGAGATGGACCAATTCACTCACACACTAGTCCCATTCCCTCTCCTCGCCTCTCACGGTGACTACTATCCCGACACTCAAGATCTCACTGTTGACACAGAAGCAAGAGATTACTGGCTCAAGTGCTTTGAGGACGCATTAGACAAAGTAGTTGATCGTGCAGTAGCCAGCCAACCAGACGCCCCAGACGCCAAAGAAAGAGCAGAAAAGTTTCGCAACAAATTTCGACTTCGCCTCGATGTTCTCAAGCAACAACCTGCGGCTTATGGAACTTTGAATGTTCGTAGTTTGTTGGACGTGAGAGAACAGTACCTCAACGAGTTTAGCTTTCCTGATCCTTACGCAGAGGTTAAGCAAGAAGAGAACGAGGCTGCGCTTCTTCTGCTGTCCAAGCGACTCAAAGAACTAGACGCGATGTCATGGGAAAAGCGACAGCTCGCTCTGATTGAAGGAATAATAGCTGGCAATGTTTTTGACTGGGGTGCTAAGGAAGTTGCAAAACTCATGGAAGGAGGCCAACTTGACTTCGAATCAGCTATGAAAAAATTACAAGCTCGGCCCTGGTTAAAAGATGACCTTGATGCCTGGATTGAAAGGTCAAAGGGCCCTCCTCATAAACTAGCTGTCATATTTGTGGATAACAGTGGCGTGGATATTATCTTAGGAATGTTTCCATTCGTCAGAGAACTTCTTTCACGTGGAACTAAGGTTGTCATGGCTGCTAACTCTTATCCAGCCCTGAATGACGTCATGTACAGTGAACTTGTGATCTTAACAGAAAAAGTAGCAGATTTATGTCCAGAAATAAGGACTGCATATAAGGAAGAACGATTAGTCCCCATGGAATCGGGCATCGGTTCGCCTTGTTTGGATTGCAGGTATGCTTATCTTATTCACATTTCACCACTAAATCTAAATCTCCTCACTTCAGACAAGGAAAAATATTTTGTTTCTACATGTAACAATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80YV4	4'-phosphopantetheine phosphatase OS=Mus musculus OX=10090 GN=Pank4 PE=1 SV=2
Q923S8	4'-phosphopantetheine phosphatase OS=Rattus norvegicus OX=10116 GN=Pank4 PE=1 SV=1
Q9NVE7	4'-phosphopantetheine phosphatase OS=Homo sapiens OX=9606 GN=PANK4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001784 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01937 all species →	ARMT1-like_dom	Damage-control phosphatase ARMT1-like domain	Domain	Interproscan
PF03630 all species →	Fumble	Fumble	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR035073 all species →	Homologous_superfamily	At2g17340, three-helix bundle domain	Interproscan
IPR036075 all species →	Homologous_superfamily	Damage-control phosphatase ARMT1-like, metal-binding domain superfamily	Interproscan
IPR004567 all species →	Family	Type II pantothenate kinase	Interproscan
IPR002791 all species →	Domain	Damage-control phosphatase ARMT1-like, metal-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12280 all species →	PANTOTHENATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004594 all species →	Molecular Function	pantothenate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0015937 all species →	Biological Process	coenzyme A biosynthetic process	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24265	PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein	-	Cofactor metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.