Gene detail

Detailed information of evm.model.Ap8.2851 in Astrangia poculata

Genomic Location: Ap8:30574892...30590743
NR annotation: XP_020632630.1, transmembrane 9 superfamily member 2-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.2851

atggagagctataattcacctgggtttgttttgttggttttgagcgcgtggatttcttgttgcgttgcgttttacctacctggtctggctcctgtttcgtattgtgaaccgggcaaaataacaaatcctgcttgtttgtcccaaattgagttgtttgtcaaccgactagactctgtggaatcagtgataccttatgagtatgcaagctttgatttctgttcccctcccttaagcgaatcatcaccaacagaaaatcttggccaggttgtgtttggggaaaggataagaccgtctagctataatataacattcaagaaagaagagaaatgcaaaactctttgtaaaaaaacttaccaaggtggtaatagtgaagatatgaaaaagctggaatttttgagaagtggtattgctcttaattatcagaatcactggataattgacaacatgcctgttacatggtgttatgaagtcgcagatgaagaaagcaaatactgctcaactggatttcctattggttgtcacgtgtctgaagatggacaagcacgcgatgcatgtgtgacgagtaccaaatttaatgaaaatgggatgcactatgtgttcaatcatgtcgatattgaaatcaaataccatgatggtacaggcgaagattgggatggatctcgtctaatgtctgcaaaagttacaccaagaagcattgaacacaaaagtgaaggagactgtgattcgcctagcttaccagctatgggaattgcaagtgagctcaaaggcacggataaagttgaaatcacctactcctactctgtcatgtttcttgcagagcaagatcccaatcacaagtgggcatcacgttgggactacattcttgactcaatgccgcataccaagatccagtggtttagcatcatgaattctttggttattgtcctgttcttgtctggcatggtagccatgattatgttgcgaactctgcataaggacattgcccgttacaatcagatagaatcagcggaggatgctcaagaagaatttggctggaagttggttcatggagatgtatttcgtcctcctaagaagggtatgctactgtctgtgatgctgggatgtggaacacagatcttcatcatgatgttcttcacactcgtatttgcttgcctgggatttctgtcgcctgccaaccgtggagccctgatgacttgtgctctggtgctgtttgtttgccttggatctcctgctggttatgtttctgccagaatttacaagatggttggtggtgaattatggaagacaaatgtgttgctgtccgcattcttcttccctggactgatgtttggcatttttttcctgttgaatcttgtcttgtgggctgaaggctcatcagctgcagttcctttcaccacattactcgctttgttagccatgtggtttggcatttcagttcctcttacattcctgggtgcttaccttggattcaaaaagaagccaattgaacagccagtgcgtaccaaccaaatccctcggcagatccctgatcagagtatttacaccagagcaggcccagggataatcatgggaggtgttctgccatttggctgcatttttatccagttattcttcatcttgaacagcatttggtcacatcagatctattacatgtttggtttcttgtttgttgtgtgcttaatcctgctgttgactgtatcagagacgaccattctgttgtgttatttccatctttgtgcggaggattatcactggtggtggcggtcattcctgactggtggttgtactgctgtgtatttcttcttgtactctattcatttctttgtcaccaagttgacgatcactggaacagcctcgaccttcttgtactttggctacactcttatcatggtgctgatattcttccttttcactggtactgtgggattcttcgcctgcttcttctttgtgagaaaaatctacagcattgtcaaagtcgactaa

Transcript

evm.model.Ap8.2851

ATGGAGAGCTATAATTCACCTGGGTTTGTTTTGTTGGTTTTGAGCGCGTGGATTTCTTGTTGCGTTGCGTTTTACCTACCTGGTCTGGCTCCTGTTTCGTATTGTGAACCGGGCAAAATAACAAATCCTGCTTGTTTGTCCCAAATTGAGTTGTTTGTCAACCGACTAGACTCTGTGGAATCAGTGATACCTTATGAGTATGCAAGCTTTGATTTCTGTTCCCCTCCCTTAAGCGAATCATCACCAACAGAAAATCTTGGCCAGGTTGTGTTTGGGGAAAGGATAAGACCGTCTAGCTATAATATAACATTCAAGAAAGAAGAGAAATGCAAAACTCTTTGTAAAAAAACTTACCAAGGTGGTAATAGTGAAGATATGAAAAAGCTGGAATTTTTGAGAAGTGGTATTGCTCTTAATTATCAGAATCACTGGATAATTGACAACATGCCTGTTACATGGTGTTATGAAGTCGCAGATGAAGAAAGCAAATACTGCTCAACTGGATTTCCTATTGGTTGTCACGTGTCTGAAGATGGACAAGCACGCGATGCATGTGTGACGAGTACCAAATTTAATGAAAATGGGATGCACTATGTGTTCAATCATGTCGATATTGAAATCAAATACCATGATGGTACAGGCGAAGATTGGGATGGATCTCGTCTAATGTCTGCAAAAGTTACACCAAGAAGCATTGAACACAAAAGTGAAGGAGACTGTGATTCGCCTAGCTTACCAGCTATGGGAATTGCAAGTGAGCTCAAAGGCACGGATAAAGTTGAAATCACCTACTCCTACTCTGTCATGTTTCTTGCAGAGCAAGATCCCAATCACAAGTGGGCATCACGTTGGGACTACATTCTTGACTCAATGCCGCATACCAAGATCCAGTGGTTTAGCATCATGAATTCTTTGGTTATTGTCCTGTTCTTGTCTGGCATGGTAGCCATGATTATGTTGCGAACTCTGCATAAGGACATTGCCCGTTACAATCAGATAGAATCAGCGGAGGATGCTCAAGAAGAATTTGGCTGGAAGTTGGTTCATGGAGATGTATTTCGTCCTCCTAAGAAGGGTATGCTACTGTCTGTGATGCTGGGATGTGGAACACAGATCTTCATCATGATGTTCTTCACACTCGTATTTGCTTGCCTGGGATTTCTGTCGCCTGCCAACCGTGGAGCCCTGATGACTTGTGCTCTGGTGCTGTTTGTTTGCCTTGGATCTCCTGCTGGTTATGTTTCTGCCAGAATTTACAAGATGGTTGGTGGTGAATTATGGAAGACAAATGTGTTGCTGTCCGCATTCTTCTTCCCTGGACTGATGTTTGGCATTTTTTTCCTGTTGAATCTTGTCTTGTGGGCTGAAGGCTCATCAGCTGCAGTTCCTTTCACCACATTACTCGCTTTGTTAGCCATGTGGTTTGGCATTTCAGTTCCTCTTACATTCCTGGGTGCTTACCTTGGATTCAAAAAGAAGCCAATTGAACAGCCAGTGCGTACCAACCAAATCCCTCGGCAGATCCCTGATCAGAGTATTTACACCAGAGCAGGCCCAGGGATAATCATGGGAGGTGTTCTGCCATTTGGCTGCATTTTTATCCAGTTATTCTTCATCTTGAACAGCATTTGGTCACATCAGATCTATTACATGTTTGGTTTCTTGTTTGTTGTGTGCTTAATCCTGCTGTTGACTGTATCAGAGACGACCATTCTGTTGTGTTATTTCCATCTTTGTGCGGAGGATTATCACTGGTGGTGGCGGTCATTCCTGACTGGTGGTTGTACTGCTGTGTATTTCTTCTTGTACTCTATTCATTTCTTTGTCACCAAGTTGACGATCACTGGAACAGCCTCGACCTTCTTGTACTTTGGCTACACTCTTATCATGGTGCTGATATTCTTCCTTTTCACTGGTACTGTGGGATTCTTCGCCTGCTTCTTCTTTGTGAGAAAAATCTACAGCATTGTCAAAGTCGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66HG5	Transmembrane 9 superfamily member 2 OS=Rattus norvegicus OX=10116 GN=Tm9sf2 PE=2 SV=1
P58021	Transmembrane 9 superfamily member 2 OS=Mus musculus OX=10090 GN=Tm9sf2 PE=1 SV=1
Q99805	Transmembrane 9 superfamily member 2 OS=Homo sapiens OX=9606 GN=TM9SF2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000701 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02990 all species →	EMP70	Endomembrane protein 70	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004240 all species →	Family	Nonaspanin (TM9SF)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10766 all species →	TRANSMEMBRANE 9 SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0072657 all species →	Biological Process	protein localization to membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17086	TM9SF2_4; transmembrane 9 superfamily member 2/4	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.