Gene detail

Detailed information of evm.model.Ap8.29 in Astrangia poculata

Genomic Location: Ap8:409034...412488
NR annotation: XP_020601546.1, DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F2Z4H3	DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Bos taurus OX=9913 GN=POLR2H PE=1 SV=1
P52434	DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens OX=9606 GN=POLR2H PE=1 SV=4
Q923G2	DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus OX=10090 GN=Polr2h PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008467 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03870 all species →	RNA_pol_Rpb8	RNA polymerase Rpb8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR005570 all species →	Family	DNA-directed RNA polymerases I, II, and III subunit RPABC3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10917 all species →	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001055 all species →	Molecular Function	RNA polymerase II activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665 all species →	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03016	RPABC3, RPB8, POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.