Gene detail

Detailed information of evm.model.Ap8.372 in Astrangia poculata

Genomic Location: Ap8:3929740...3937671
NR annotation: KAJ7392780.1, hypothetical protein OS493_010437 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.372

atgccgactacgatagatgatatcgaagagatggacgatctctacgaaataatgaaatcatttggtcttagcacaaaaggaattaaaggagtggatggcatgaaagccaaatgtcgtgaatatttaaaagatctagagggatcatccaaacgtaaagttggagaaacctttcaaattttatcagaatcttgcaagacagatgcatacaaacgcggaattttgtgtaacctttatgaagaggcagtagagttctttcagcagttggacaaagacttcatcatgcaaaaccttcaggaaagcttgggagattttaagacaactctggaagaaaatctgaaaaatatcaaaccgagggatcaatatgtagttctgattgcaggtgaaaccagtgctggtaaaagcagcatcatcaacctaattctcggagaggatctcttgccatattccattcttagcacaacatcaacgatatgcgaattgaaatatggcgacaagcccgcaattggggtacactttaaagacggaagcggagagagtcgtgaacctttctaccaggaacttggtcattcttcagcgagctacaaagaggagatagaagaatttgttcacttaaaagatgaacgagagaagggatctccatacaagaagatagagctgttttggccacatcctttgttcaagggcgttaaggcctcagccggtatagcccttgggatcaaaaaaacacgcaatcttcaacaccaagacaaggaaggtgtcatgattgttgatagtcctggagtgggagaaagcgaagccatgaatgaatttgtccttagctatctgccacaggccttttgcttcatctatgtgattaaaagttccaacgctggaggaattcaggaagacaggcttggtatgttgcttaactatgctacaacgctgaaggggaaagcaaacatggacgttaagttattcacgtcttgtgcattattcgtttgcaatatgtgggatcaaattcctactgaaaatgtcgaggaagtgaagaggacacaaattcagaaacttaccaagaagttgggagacctggatcaagagaagcagatcatttacttgtcgtgccaaagagcgcagcacgcacagacgtatggtgtcataactgaagactttgatcagctgttaagtggaataaacaatcttgtgatttcttccatgcagactagtctgcaaatttattccagatggctcgaggatgtcctgtctcgtgcctccacccaagtcaggacactgcttaaatcaacggacatgtcacgccaggagacagagaagaggatgaaaagagtcatggaaagaatggtagaattggaaagttcgcaggatcgcatttttgtcgaacttagtgaatatcagttgcaggtgataaaagagattattggaaatcttgtaatctatttcaaagatgaagaaacttctaacagattctgcaactggtcttcgtgcaaagtacctgatcctagatcgacatgggaggaaactaaaggtgaagttttacagtgcatttccgaaaaagcccagcagtacgtgcaggaatgggaagatgaagagcatcattttgcaaaggcccaggttgcgctgattaaatattttactgaaaagtacgatatcatggaagaggaaatccgaaaggtcgaagaagatgctatttttggagaagtagatcacgaaagtccttctcgtgagcctcccaaaccagcaatgtctcgtaaaaacctgcccaaaaagtccatagatgtcactactccagtgtggttccgtcaaggtttggcctcggtggtggttggtgcaccatttcttggttctcttacgcagaaagtcaaacagaagtttcaatacaaaaagaagcttgagaggtacaagaaagacccattctcctacatggaaaagagatctaagaaatgccttaaaatcattgccagtgaggataggctgcttccgtttataagcggacagttagaagatgccgttaagttcctgactcagatcagagctaagataccacgactgagagaaggagataagaagttgtatcatcagctgctcaccgagtctagaagcaagttggagatcaaagggatttacgaaccagtgagcacgcgcttggaggagttaaaacgagacatcacagtgttcaacgtcaaagagataaggaaatcagatttctcacgcgaggagttaaaatggatcgaggaagagaaatcagtcattggaagaggaaccttctcgaccgtgtattgcggtgttctttctcgaaaaggagaaccagaaattgaggtggcactcaaggtgtacagcaatcctcttaaacgaaacaacgtgtggcatttcattgacgaggaaatagctctaagagaattgcgtcacccaaacattgtaaagttctttggaacaaatctccaaaagtcaccttgtggaactaaagtgatggtcatcttagagctctgtgagtgctcccttaaaacgcgcatcatgtcccatccagagaatgctccagcccactcagaagacgtaacagtgaaaaagaatgcactgctatgggttctgcaaattcttgatgcgttaagctatgttcacgaacatgagtttgttcaccgggacctaaaattggacaatttattgttgacagttgacaacaaagtgaaactaaccgatgttggcgtggccaaacacgaaaaagacatatccggtacaatgtgcggtaccttgctttacctggcgcccgaagtaatggatggtcgaatttacaacagcaaggctgacatgtacagttttggcatgatactttgggagatgtggtatgccaagacagcattccaaaacgaactggcgagtcgatctcatttcaagcttctgaatgatataagagagggtcttcgcccaagccacattagaggcacacgccaaccttgggggatgtggcaacttgtcatgcagacgtgttgggacaaagagccacaacatcggctaactgctcagcagaccaggaacgagctcgaaaagcatcaaaagaaaatggaaaagcagagtgggtctcctttcgaaacagcactacacagttcccgtgaagatgaattacttgctgctggaccaaattcttctccttcaaagccacagcaagctccaaaaccacgactagccccaaagccacaagtagccccaaaaccacggccagcaccaaaaccgaatacgccaaaaccagcatctgtgtcattttctgccaagaatgaagatgctaatgtgcattttcaatag

Transcript

evm.model.Ap8.372

ATGCCGACTACGATAGATGATATCGAAGAGATGGACGATCTCTACGAAATAATGAAATCATTTGGTCTTAGCACAAAAGGAATTAAAGGAGTGGATGGCATGAAAGCCAAATGTCGTGAATATTTAAAAGATCTAGAGGGATCATCCAAACGTAAAGTTGGAGAAACCTTTCAAATTTTATCAGAATCTTGCAAGACAGATGCATACAAACGCGGAATTTTGTGTAACCTTTATGAAGAGGCAGTAGAGTTCTTTCAGCAGTTGGACAAAGACTTCATCATGCAAAACCTTCAGGAAAGCTTGGGAGATTTTAAGACAACTCTGGAAGAAAATCTGAAAAATATCAAACCGAGGGATCAATATGTAGTTCTGATTGCAGGTGAAACCAGTGCTGGTAAAAGCAGCATCATCAACCTAATTCTCGGAGAGGATCTCTTGCCATATTCCATTCTTAGCACAACATCAACGATATGCGAATTGAAATATGGCGACAAGCCCGCAATTGGGGTACACTTTAAAGACGGAAGCGGAGAGAGTCGTGAACCTTTCTACCAGGAACTTGGTCATTCTTCAGCGAGCTACAAAGAGGAGATAGAAGAATTTGTTCACTTAAAAGATGAACGAGAGAAGGGATCTCCATACAAGAAGATAGAGCTGTTTTGGCCACATCCTTTGTTCAAGGGCGTTAAGGCCTCAGCCGGTATAGCCCTTGGGATCAAAAAAACACGCAATCTTCAACACCAAGACAAGGAAGGTGTCATGATTGTTGATAGTCCTGGAGTGGGAGAAAGCGAAGCCATGAATGAATTTGTCCTTAGCTATCTGCCACAGGCCTTTTGCTTCATCTATGTGATTAAAAGTTCCAACGCTGGAGGAATTCAGGAAGACAGGCTTGGTATGTTGCTTAACTATGCTACAACGCTGAAGGGGAAAGCAAACATGGACGTTAAGTTATTCACGTCTTGTGCATTATTCGTTTGCAATATGTGGGATCAAATTCCTACTGAAAATGTCGAGGAAGTGAAGAGGACACAAATTCAGAAACTTACCAAGAAGTTGGGAGACCTGGATCAAGAGAAGCAGATCATTTACTTGTCGTGCCAAAGAGCGCAGCACGCACAGACGTATGGTGTCATAACTGAAGACTTTGATCAGCTGTTAAGTGGAATAAACAATCTTGTGATTTCTTCCATGCAGACTAGTCTGCAAATTTATTCCAGATGGCTCGAGGATGTCCTGTCTCGTGCCTCCACCCAAGTCAGGACACTGCTTAAATCAACGGACATGTCACGCCAGGAGACAGAGAAGAGGATGAAAAGAGTCATGGAAAGAATGGTAGAATTGGAAAGTTCGCAGGATCGCATTTTTGTCGAACTTAGTGAATATCAGTTGCAGGTGATAAAAGAGATTATTGGAAATCTTGTAATCTATTTCAAAGATGAAGAAACTTCTAACAGATTCTGCAACTGGTCTTCGTGCAAAGTACCTGATCCTAGATCGACATGGGAGGAAACTAAAGGTGAAGTTTTACAGTGCATTTCCGAAAAAGCCCAGCAGTACGTGCAGGAATGGGAAGATGAAGAGCATCATTTTGCAAAGGCCCAGGTTGCGCTGATTAAATATTTTACTGAAAAGTACGATATCATGGAAGAGGAAATCCGAAAGGTCGAAGAAGATGCTATTTTTGGAGAAGTAGATCACGAAAGTCCTTCTCGTGAGCCTCCCAAACCAGCAATGTCTCGTAAAAACCTGCCCAAAAAGTCCATAGATGTCACTACTCCAGTGTGGTTCCGTCAAGGTTTGGCCTCGGTGGTGGTTGGTGCACCATTTCTTGGTTCTCTTACGCAGAAAGTCAAACAGAAGTTTCAATACAAAAAGAAGCTTGAGAGGTACAAGAAAGACCCATTCTCCTACATGGAAAAGAGATCTAAGAAATGCCTTAAAATCATTGCCAGTGAGGATAGGCTGCTTCCGTTTATAAGCGGACAGTTAGAAGATGCCGTTAAGTTCCTGACTCAGATCAGAGCTAAGATACCACGACTGAGAGAAGGAGATAAGAAGTTGTATCATCAGCTGCTCACCGAGTCTAGAAGCAAGTTGGAGATCAAAGGGATTTACGAACCAGTGAGCACGCGCTTGGAGGAGTTAAAACGAGACATCACAGTGTTCAACGTCAAAGAGATAAGGAAATCAGATTTCTCACGCGAGGAGTTAAAATGGATCGAGGAAGAGAAATCAGTCATTGGAAGAGGAACCTTCTCGACCGTGTATTGCGGTGTTCTTTCTCGAAAAGGAGAACCAGAAATTGAGGTGGCACTCAAGGTGTACAGCAATCCTCTTAAACGAAACAACGTGTGGCATTTCATTGACGAGGAAATAGCTCTAAGAGAATTGCGTCACCCAAACATTGTAAAGTTCTTTGGAACAAATCTCCAAAAGTCACCTTGTGGAACTAAAGTGATGGTCATCTTAGAGCTCTGTGAGTGCTCCCTTAAAACGCGCATCATGTCCCATCCAGAGAATGCTCCAGCCCACTCAGAAGACGTAACAGTGAAAAAGAATGCACTGCTATGGGTTCTGCAAATTCTTGATGCGTTAAGCTATGTTCACGAACATGAGTTTGTTCACCGGGACCTAAAATTGGACAATTTATTGTTGACAGTTGACAACAAAGTGAAACTAACCGATGTTGGCGTGGCCAAACACGAAAAAGACATATCCGGTACAATGTGCGGTACCTTGCTTTACCTGGCGCCCGAAGTAATGGATGGTCGAATTTACAACAGCAAGGCTGACATGTACAGTTTTGGCATGATACTTTGGGAGATGTGGTATGCCAAGACAGCATTCCAAAACGAACTGGCGAGTCGATCTCATTTCAAGCTTCTGAATGATATAAGAGAGGGTCTTCGCCCAAGCCACATTAGAGGCACACGCCAACCTTGGGGGATGTGGCAACTTGTCATGCAGACGTGTTGGGACAAAGAGCCACAACATCGGCTAACTGCTCAGCAGACCAGGAACGAGCTCGAAAAGCATCAAAAGAAAATGGAAAAGCAGAGTGGGTCTCCTTTCGAAACAGCACTACACAGTTCCCGTGAAGATGAATTACTTGCTGCTGGACCAAATTCTTCTCCTTCAAAGCCACAGCAAGCTCCAAAACCACGACTAGCCCCAAAGCCACAAGTAGCCCCAAAACCACGGCCAGCACCAAAACCGAATACGCCAAAACCAGCATCTGTGTCATTTTCTGCCAAGAATGAAGATGCTAATGTGCATTTTCAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ZQ31	Serine/threonine-protein kinase STY13 OS=Arabidopsis thaliana OX=3702 GN=STY13 PE=1 SV=2
O01700	Mitogen-activated protein kinase kinase kinase dlk-1 OS=Caenorhabditis elegans OX=6239 GN=dlk-1 PE=1 SV=4
Q54RB7	Dual specificity protein kinase shkA OS=Dictyostelium discoideum OX=44689 GN=shkA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000357 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR26392 all species →	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16288	DSTYK, RIPK5; dual serine/threonine and tyrosine protein kinase	EC:2.7.12.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.