Gene detail

Detailed information of evm.model.Ap8.380 in Astrangia poculata

Genomic Location: Ap8:4023063...4034327
NR annotation: XP_020611937.1, uncharacterized protein LOC110050360 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.380

atgttgatggaactgggaattgacacaagaaatgtttatgaagacttttttgagaaagcctaccttcaagagtctgcagaattctacaaattagaaagtcaggagttacttaaagaaaacaatgcatccttatatcttcaaaaggttgaaaccagaattaacgaggagtcagaacgggcacaacattgtctggatcccaccacagaggagcctattgtaaaggtggttgaagaggaattaatacacaagcacatgaagacagtgattgaaatggaaaattctggcgtgaatcatatgctaaaacacaacagagtagaagatctggcaagattgtgccgactttttaagagagtcaagggaagaaataatgatattttgatggagtggttaaagacggtgcacgattgcgtgagacgatactttccagaagaagcgaaggaaatggaaagtggtgaaaatccaaccacttacattcagaaattagaacatgttatcaatctcattacagaaaacaaagtacctccagagattcttgcacgaggacctttggctttgcaagcttacagtaaggcccttgctgaagggacgacttgtcacaagagggtgccagtcatgttgattggtcaggaacgctcaggaaagaccagtttaaagaagtcactcaggggagaacctttcaacccaaacgaagacagcactgtagggatagatgttgatcctactcatttcaaagtatcaactgagatttggaaagtgggagagaaagaccaagcaacaaattctgggacaactatttcctatgagcacaatgcagcccgattgactgtcgaaaaactgagggaagaaaaaatcattcctaaagaccaagcttcaccagagtctatgcagtctgtcgacattcctttggttgagaaagagtctggaagtgtaagcagtgatttcatttcagcatcttcagctttagatatgactaactcaagtagccattactcatctcaagttggcattagcgatttaacgtcagtatcttcaggtgcagctgtacctagcaccggtaggcaagattcagcaaaaggcccttatatttccaaggacccaaggtcgagtgagttgccaagtgatcttcaatctattcagccatccagagatccacaatctggtgtcaacatacctgatatgcccgaagatgtagcaactttgattgaaaggctactaaaagaagttgataaagtgggagaccaagaagacatttattcagtattgtgggattttgctgggcagtcagtttactatacaacacacccactatttctaactgcaagagcagtttaccttttagtaaatgacctcagccaaaatccacaagaaagagccaaaccagttgtgacgcaaggaatgttcagtaagcttgaagacgcgtttgcagtgaaaactaatttggattatctagatttgtggatgtcgtctgttgcttccttgaccattcaagatgaaattcaccaagcaggtcctgagtctgaagtgttaacagagaagcttcctccggttttcttagtttgcactcatgctgacacaccgtatagtggaggtgatccttttacactagccaaggaggtttttggttccctacgaaccaagccgtacagaagtcacttgtatgaagatgtctttgttgtggataacacaaagtcaggtaatgaatccgagtgttcagaaatcgtacgcttacgtcaagaagtgcttgaatttgctaaggaactaccacagctgaaagaacccattccaattaagtggttgaggtatgagaaggctcttcaggtcatgaaaaaagatggtcacaaatggatccctctcgaaagtgctaaaaagattgcgtctgaagtgtgtaatattgttgatgacgtacaattccaaacattattgaactttctgcatgaccaaaggattttgattcactttgatgactctccaaagctgaaccaactggtggtcttagatcctcagtggttgattgacgtcttcaaggaagtgataaccataaggaaattcaaccgtaaagagaagagttttgaaaacttatggtgcaagcttcaggaaacaggtatactggaggaaaaactcctagaacatgtgtggggtcctttgtttgacaacaaagaaacacgtgagagtcttctcgaaatcatggaaaaattcagcttgctttgtccttggccatcatcagatgcttcatgtagtaagcaatacttggtgccatccatgttgatgtcacatcccccagagggtatcttgcagttggctgcatcggcccaaattccacctcttttccttaaatttgaatctggtcaagttccacttggcttgtttccacgactggtactgaagttcttagagtgggaaaaggaagaatttctaaacccacagctgtatcacaattttgccagattctacccctttaaagacaaacaatgctctgtaatccttctgtgtaaatcttctcacattaaagtcgttattcacagagaaaaacgtgtccatgagttggcagaaagttcacagtcaacggtaacattgtctacagatttgaactatgacagtttccaagtgtcttgtgctcgtacggtgcgcaggcagctgacatcgatactcaagccaatgcgaaaggagttttgttggcttaagaatatgcgatatgcattcaattacatctgcccagtttgctgtcaaggagatacagttaactactgtcgcacacatcgtgtaaaaggttgcaagcgagaggaatgcctgcatttcttgtctgagtgtcaatttggcaatgtcaaaaacgagatcttatgcaggaagtctgctgatgcacagaacaacacagttcagattaagcgattttcgccatggtttgcgccactgggaaatgacaatcagctaacagttgatcgatccgatggaagcaaattgacttctttggaaggcccttctggtgaaggttcacctgcaaagcataagagcacatcaccatctggttcaagccgcaaacgttttaaacaaatgagattgacgtctaagcactcggaagatacggtgaaggaaggcacgcctacaaatgaggacatgcagcgattagcaaaggaaatccctaaagattggagaaatcttgggcgtcggttattagaatataatgaggcagcgctcgatgctattgataaaaacaacgaggattgctatgaaaaggcttataacatgttgttgaagtggaaaagaggtgaaggctcaggcgcaactttccacgtcttacatgacgccttgtgtcacgatttagtcaatcgtaaagatttagcggaacaattttgctgtggagcgcattga

Transcript

evm.model.Ap8.380

ATGTTGATGGAACTGGGAATTGACACAAGAAATGTTTATGAAGACTTTTTTGAGAAAGCCTACCTTCAAGAGTCTGCAGAATTCTACAAATTAGAAAGTCAGGAGTTACTTAAAGAAAACAATGCATCCTTATATCTTCAAAAGGTTGAAACCAGAATTAACGAGGAGTCAGAACGGGCACAACATTGTCTGGATCCCACCACAGAGGAGCCTATTGTAAAGGTGGTTGAAGAGGAATTAATACACAAGCACATGAAGACAGTGATTGAAATGGAAAATTCTGGCGTGAATCATATGCTAAAACACAACAGAGTAGAAGATCTGGCAAGATTGTGCCGACTTTTTAAGAGAGTCAAGGGAAGAAATAATGATATTTTGATGGAGTGGTTAAAGACGGTGCACGATTGCGTGAGACGATACTTTCCAGAAGAAGCGAAGGAAATGGAAAGTGGTGAAAATCCAACCACTTACATTCAGAAATTAGAACATGTTATCAATCTCATTACAGAAAACAAAGTACCTCCAGAGATTCTTGCACGAGGACCTTTGGCTTTGCAAGCTTACAGTAAGGCCCTTGCTGAAGGGACGACTTGTCACAAGAGGGTGCCAGTCATGTTGATTGGTCAGGAACGCTCAGGAAAGACCAGTTTAAAGAAGTCACTCAGGGGAGAACCTTTCAACCCAAACGAAGACAGCACTGTAGGGATAGATGTTGATCCTACTCATTTCAAAGTATCAACTGAGATTTGGAAAGTGGGAGAGAAAGACCAAGCAACAAATTCTGGGACAACTATTTCCTATGAGCACAATGCAGCCCGATTGACTGTCGAAAAACTGAGGGAAGAAAAAATCATTCCTAAAGACCAAGCTTCACCAGAGTCTATGCAGTCTGTCGACATTCCTTTGGTTGAGAAAGAGTCTGGAAGTGTAAGCAGTGATTTCATTTCAGCATCTTCAGCTTTAGATATGACTAACTCAAGTAGCCATTACTCATCTCAAGTTGGCATTAGCGATTTAACGTCAGTATCTTCAGGTGCAGCTGTACCTAGCACCGGTAGGCAAGATTCAGCAAAAGGCCCTTATATTTCCAAGGACCCAAGGTCGAGTGAGTTGCCAAGTGATCTTCAATCTATTCAGCCATCCAGAGATCCACAATCTGGTGTCAACATACCTGATATGCCCGAAGATGTAGCAACTTTGATTGAAAGGCTACTAAAAGAAGTTGATAAAGTGGGAGACCAAGAAGACATTTATTCAGTATTGTGGGATTTTGCTGGGCAGTCAGTTTACTATACAACACACCCACTATTTCTAACTGCAAGAGCAGTTTACCTTTTAGTAAATGACCTCAGCCAAAATCCACAAGAAAGAGCCAAACCAGTTGTGACGCAAGGAATGTTCAGTAAGCTTGAAGACGCGTTTGCAGTGAAAACTAATTTGGATTATCTAGATTTGTGGATGTCGTCTGTTGCTTCCTTGACCATTCAAGATGAAATTCACCAAGCAGGTCCTGAGTCTGAAGTGTTAACAGAGAAGCTTCCTCCGGTTTTCTTAGTTTGCACTCATGCTGACACACCGTATAGTGGAGGTGATCCTTTTACACTAGCCAAGGAGGTTTTTGGTTCCCTACGAACCAAGCCGTACAGAAGTCACTTGTATGAAGATGTCTTTGTTGTGGATAACACAAAGTCAGGTAATGAATCCGAGTGTTCAGAAATCGTACGCTTACGTCAAGAAGTGCTTGAATTTGCTAAGGAACTACCACAGCTGAAAGAACCCATTCCAATTAAGTGGTTGAGGTATGAGAAGGCTCTTCAGGTCATGAAAAAAGATGGTCACAAATGGATCCCTCTCGAAAGTGCTAAAAAGATTGCGTCTGAAGTGTGTAATATTGTTGATGACGTACAATTCCAAACATTATTGAACTTTCTGCATGACCAAAGGATTTTGATTCACTTTGATGACTCTCCAAAGCTGAACCAACTGGTGGTCTTAGATCCTCAGTGGTTGATTGACGTCTTCAAGGAAGTGATAACCATAAGGAAATTCAACCGTAAAGAGAAGAGTTTTGAAAACTTATGGTGCAAGCTTCAGGAAACAGGTATACTGGAGGAAAAACTCCTAGAACATGTGTGGGGTCCTTTGTTTGACAACAAAGAAACACGTGAGAGTCTTCTCGAAATCATGGAAAAATTCAGCTTGCTTTGTCCTTGGCCATCATCAGATGCTTCATGTAGTAAGCAATACTTGGTGCCATCCATGTTGATGTCACATCCCCCAGAGGGTATCTTGCAGTTGGCTGCATCGGCCCAAATTCCACCTCTTTTCCTTAAATTTGAATCTGGTCAAGTTCCACTTGGCTTGTTTCCACGACTGGTACTGAAGTTCTTAGAGTGGGAAAAGGAAGAATTTCTAAACCCACAGCTGTATCACAATTTTGCCAGATTCTACCCCTTTAAAGACAAACAATGCTCTGTAATCCTTCTGTGTAAATCTTCTCACATTAAAGTCGTTATTCACAGAGAAAAACGTGTCCATGAGTTGGCAGAAAGTTCACAGTCAACGGTAACATTGTCTACAGATTTGAACTATGACAGTTTCCAAGTGTCTTGTGCTCGTACGGTGCGCAGGCAGCTGACATCGATACTCAAGCCAATGCGAAAGGAGTTTTGTTGGCTTAAGAATATGCGATATGCATTCAATTACATCTGCCCAGTTTGCTGTCAAGGAGATACAGTTAACTACTGTCGCACACATCGTGTAAAAGGTTGCAAGCGAGAGGAATGCCTGCATTTCTTGTCTGAGTGTCAATTTGGCAATGTCAAAAACGAGATCTTATGCAGGAAGTCTGCTGATGCACAGAACAACACAGTTCAGATTAAGCGATTTTCGCCATGGTTTGCGCCACTGGGAAATGACAATCAGCTAACAGTTGATCGATCCGATGGAAGCAAATTGACTTCTTTGGAAGGCCCTTCTGGTGAAGGTTCACCTGCAAAGCATAAGAGCACATCACCATCTGGTTCAAGCCGCAAACGTTTTAAACAAATGAGATTGACGTCTAAGCACTCGGAAGATACGGTGAAGGAAGGCACGCCTACAAATGAGGACATGCAGCGATTAGCAAAGGAAATCCCTAAAGATTGGAGAAATCTTGGGCGTCGGTTATTAGAATATAATGAGGCAGCGCTCGATGCTATTGATAAAAACAACGAGGATTGCTATGAAAAGGCTTATAACATGTTGTTGAAGTGGAAAAGAGGTGAAGGCTCAGGCGCAACTTTCCACGTCTTACATGACGCCTTGTGTCACGATTTAGTCAATCGTAAAGATTTAGCGGAACAATTTTGCTGTGGAGCGCATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B5DF89	Cullin-3 OS=Rattus norvegicus OX=10116 GN=Cul3 PE=1 SV=2
Q6DE95	Cullin-3-A OS=Xenopus laevis OX=8355 GN=cul3a PE=1 SV=1
Q6GPF3	Cullin-3-B OS=Xenopus laevis OX=8355 GN=cul3b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00888 all species →	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR045093 all species →	Family	Cullin	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001373 all species →	Domain	Cullin, N-terminal	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932 all species →	CULLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031463 all species →	Cellular Component	Cul3-RING ubiquitin ligase complex	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.380.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.