Gene detail

Detailed information of evm.model.Ap8.40 in Astrangia poculata

Genomic Location: Ap8:488452...498726
NR annotation: CAH3149599.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.40

atgatgaaaaccgtttattttcgcaagaaacccatgctgatagttgttgggctttcaggatgtcttattctgtggatggctgttcaacattaccacggcactgtaccaatggaaagaagagttttaagaacagagaagcgacaattcatgctggaagaaaagccttttcgaattctgagtggtgcaatacactactttagagttgtgccagaatattggaaagatcggctattgaaacttaaagctatgggattaaatactgtagaaacttacgttccttggaatcttcatgaagaaattaaagggcagtttaactttgaaggaatcttggatatagttggttttatcaaggaagctcagtcagttggtttatatgtgattgttcgtcctggaccgtacatctgtgccgagtgggatcttggaggactgccaagctggctgttacatgatcctaacatgaacctgagatctatgtaccgtccttaccttcatgcagtagagaaatatttcaaaaagcttcttccgatacttgtccctcttcagtattctcaagatggtccaattatagctttccaagtggaaaatgaatatggtagctttggtaaacatgaactcagcaaagaatacatggctttcctaaaaacacttatgataaatgaaggcatctcagaactgttgtttacatcagatggcatacaacaaatggaggcaacatactatcctgagttacctggagtgttgaagactgccaacttccagagcaatgagactgtttatcttaacaggcttaggcagcttcagcctgataagccactaatggtggcagaattttggccaggctggtttgatcactggggtgaacagcaccataagatggaggttgagaaggtggcacaaagagtatcaaacatactgaggatgggagcttctatcaacttctacatgtttcatggaggaacaaattttggcttcatgaatggcggaaatgctgttaaaaatgagttcaagtacaagccaacagtcacttcatatgattacgatgctccattgtcagaagctggtgacatcactgagaagttccgggcgttaaaagaagttattcaaaaatacaatccagatgccgacaaacaaagtgtatttaatgaccgtcacaagaggacaacatatgaggatattgagatgcagcatgttttggagcttgcagacatactacctttttttacgccagtcgaaacagagaatgtgatgtccatggaacagctgcccattaataacaaaggtggacagggatatggtttcactctgtatcaaaaagaactggatagtgttcctgaagaaattacaatccataacattagcgacagagcacaggttttccttgacttcaagccaatccacacaattgatgcaatgaaactagacaaacattacattgacgaaaaagagctttggaaagtgacaataaaacttgaagaaagccaaataggtgttgaaaagggttctaaagttcaacttgatattcttgttgaaaacatgggacgagtgaattttttgaaagaaatgaacagacaacggaaaggcatactcggtgatgttgtgatagacggcaaaaaacaaacaggctggaaaatctacccaatggacttcaagggaaactttttcaacagattaggcagagaatcggaatggaggaaaataaaagaaggagagttaccaaccgtgccatcgcttttccgaggaacgtttgagttaactgaggaacctaaggacacattcctgcacatgaaaagctggaccaaaggcgtgtgttttattaatggccataacttaggaaggtactggaacatagggccacaggagacgctgtatctcccagcaccttggttaaacaaaggagacaacgagctgctggtgtttgaactggagaaatgcgaagttcctgatgttgcatttctcacagaaccaaagatcaaaggggagcctgtcttcagaacgtaa

Transcript

evm.model.Ap8.40

AACGCTCGTGGAACAATGATGAAAACCGTTTATTTTCGCAAGAAACCCATGCTGATAGTTGTTGGGCTTTCAGGATGTCTTATTCTGTGGATGGCTGTTCAACATTACCACGGCACTGTACCAATGGAAAGAAGAGTTTTAAGAACAGAGAAGCGACAATTCATGCTGGAAGAAAAGCCTTTTCGAATTCTGAGTGGTGCAATACACTACTTTAGAGTTGTGCCAGAATATTGGAAAGATCGGCTATTGAAACTTAAAGCTATGGGATTAAATACTGTAGAAACTTACGTTCCTTGGAATCTTCATGAAGAAATTAAAGGGCAGTTTAACTTTGAAGGAATCTTGGATATAGTTGGTTTTATCAAGGAAGCTCAGTCAGTTGGTTTATATGTGATTGTTCGTCCTGGACCGTACATCTGTGCCGAGTGGGATCTTGGAGGACTGCCAAGCTGGCTGTTACATGATCCTAACATGAACCTGAGATCTATGTACCGTCCTTACCTTCATGCAGTAGAGAAATATTTCAAAAAGCTTCTTCCGATACTTGTCCCTCTTCAGTATTCTCAAGATGGTCCAATTATAGCTTTCCAAGTGGAAAATGAATATGGTAGCTTTGGTAAACATGAACTCAGCAAAGAATACATGGCTTTCCTAAAAACACTTATGATAAATGAAGGCATCTCAGAACTGTTGTTTACATCAGATGGCATACAACAAATGGAGGCAACATACTATCCTGAGTTACCTGGAGTGTTGAAGACTGCCAACTTCCAGAGCAATGAGACTGTTTATCTTAACAGGCTTAGGCAGCTTCAGCCTGATAAGCCACTAATGGTGGCAGAATTTTGGCCAGGCTGGTTTGATCACTGGGGTGAACAGCACCATAAGATGGAGGTTGAGAAGGTGGCACAAAGAGTATCAAACATACTGAGGATGGGAGCTTCTATCAACTTCTACATGTTTCATGGAGGAACAAATTTTGGCTTCATGAATGGCGGAAATGCTGTTAAAAATGAGTTCAAGTACAAGCCAACAGTCACTTCATATGATTACGATGCTCCATTGTCAGAAGCTGGTGACATCACTGAGAAGTTCCGGGCGTTAAAAGAAGTTATTCAAAAATACAATCCAGATGCCGACAAACAAAGTGTATTTAATGACCGTCACAAGAGGACAACATATGAGGATATTGAGATGCAGCATGTTTTGGAGCTTGCAGACATACTACCTTTTTTTACGCCAGTCGAAACAGAGAATGTGATGTCCATGGAACAGCTGCCCATTAATAACAAAGGTGGACAGGGATATGGTTTCACTCTGTATCAAAAAGAACTGGATAGTGTTCCTGAAGAAATTACAATCCATAACATTAGCGACAGAGCACAGGTTTTCCTTGACTTCAAGCCAATCCACACAATTGATGCAATGAAACTAGACAAACATTACATTGACGAAAAAGAGCTTTGGAAAGTGACAATAAAACTTGAAGAAAGCCAAATAGGTGTTGAAAAGGGTTCTAAAGTTCAACTTGATATTCTTGTTGAAAACATGGGACGAGTGAATTTTTTGAAAGAAATGAACAGACAACGGAAAGGCATACTCGGTGATGTTGTGATAGACGGCAAAAAACAAACAGGCTGGAAAATCTACCCAATGGACTTCAAGGGAAACTTTTTCAACAGATTAGGCAGAGAATCGGAATGGAGGAAAATAAAAGAAGGAGAGTTACCAACCGTGCCATCGCTTTTCCGAGGAACGTTTGAGTTAACTGAGGAACCTAAGGACACATTCCTGCACATGAAAAGCTGGACCAAAGGCGTGTGTTTTATTAATGGCCATAACTTAGGAAGGTACTGGAACATAGGGCCACAGGAGACGCTGTATCTCCCAGCACCTTGGTTAAACAAAGGAGACAACGAGCTGCTGGTGTTTGAACTGGAGAAATGCGAAGTTCCTGATGTTGCATTTCTCACAGAACCAAAGATCAAAGGGGAGCCTGTCTTCAGAACGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UPY5	Beta-galactosidase-1-like protein 2 OS=Mus musculus OX=10090 GN=Glb1l2 PE=1 SV=1
Q8IW92	Beta-galactosidase-1-like protein 2 OS=Homo sapiens OX=9606 GN=GLB1L2 PE=1 SV=1
Q8NCI6	Beta-galactosidase-1-like protein 3 OS=Homo sapiens OX=9606 GN=GLB1L3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000517 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21317 all species →	BetaGal_ABD_1	Beta-galactosidase, first all-beta domain	Domain	Interproscan
PF21467 all species →	BetaGal_gal-bd	Beta-galactosidase, galactose-binding domain	Domain	Interproscan
PF01301 all species →	Glyco_hydro_35	Glycosyl hydrolases family 35	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001944 all species →	Family	Glycoside hydrolase, family 35	Interproscan
IPR026283 all species →	Family	Beta-galactosidase 1-like	Interproscan
IPR048912 all species →	Domain	Beta-galactosidase 1-like , first all-beta domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR048913 all species →	Domain	Beta-galactosidase, galactose-binding domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR031330 all species →	Domain	Glycoside hydrolase 35, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23421 all species →	BETA-GALACTOSIDASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004565 all species →	Molecular Function	beta-galactosidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25543	GLB1L; beta-galactosidase-1-like protein	EC:3.2.1.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.