Genomic Location: Ap8:570708...574455
NR annotation: XP_020601505.1, peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.47 |
| Transcript |
| evm.model.Ap8.47 |
| Protein |
| evm.model.Ap8.47 |
| UniProt accession | Description |
|---|---|
| Q503Y7 | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Danio rerio OX=7955 GN=pin4 PE=2 SV=1 |
| Q6P4K8 | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Xenopus tropicalis OX=8364 GN=pin4 PE=2 SV=1 |
| B5KFL3 | Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Taeniopygia guttata OX=59729 GN=PIN4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007710 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13616 all species → | Rotamase_3 | PPIC-type PPIASE domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR043323 all species → | Family | Peptidyl-prolyl cis-trans isomerase PIN4 | Interproscan |
| IPR046357 all species → | Homologous_superfamily | Peptidyl-prolyl cis-trans isomerase domain superfamily | Interproscan |
| IPR000297 all species → | Domain | Peptidyl-prolyl cis-trans isomerase, PpiC-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45995 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003755 all species → | Molecular Function | peptidyl-prolyl cis-trans isomerase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09579 | PIN4; peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 | EC:5.2.1.8 | Chaperones and folding catalysts | ko03110 | deepkoala |
Transcript abundance of evm.model.Ap8.47 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
