Gene detail

Detailed information of evm.model.Ap8.475 in Astrangia poculata

Genomic Location: Ap8:5105787...5139647
NR annotation: XP_029189352.2, DNA polymerase epsilon catalytic subunit A-like [Acropora millepora]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.475

atggttctcctgaacagtggcaaaagaaagaaaggagatggcgaggaaagcgaaggaaacagttcgcgatcgcgctcaaggcctgatgaaggaagctcgacggaggcaagagttcttaggattcagtcgaacgacacactcgatgttaagtatgggtttgatcgctacaaggatccagttgataggctaggatggcttatcaacatgcacccaacagagatcattgatgatgacaagaagttggtcagtgctgtggatctttatttcattcaagatgatggaggacgtttcagggtgccattgccttacaaaccttatttctacattcttgcaaagaaagatactgatcgtgaagtggcaacattcttgaacagaaagtttggaggattgatatcaagtattgaaacagttgcaaaagaagatctggatttgaacaaccaccttgttggactgaaaagaaattacatcaagttatcatttcttactgtgaatgacttgatgaaagttaaaagggaaatcatgccagctgtccgtaagaacaaagaacaggccaagacaaatgctgcttacaacattgttatgggtgcagatatgaaggaggaggaaatgattgcagctaacagaagaaatgctgatcaaatggcaaatgttattgatatcagggaatatgatgtgccctaccatgttagagcagccattgatctcaagatttttgtgggtcactggtacaatgtgaaagttcgtggtgggattcatgctgagattagcaggagagatgacctgttggacagaccagaacctgttgtactggcatttgatatagagactactaaactgccgctcaaatttcctgactccagcacagactccattatgatgatttcttacatgattgatggccagggctatttgatcattaacagagaaatagtttctgaagacatagaagattttgagtacacaccaaaacctgagtatgaaggacagtttacagttataaatgagccagatgagtccaccctcatacagcgtttctttgagcacattcttgaagtcaaaccaaacatctttgtaacatacaatggagattcttttgattggccatttgttgaggcccgtgcagctcaccatggaatcaacatgtacgatgaaattggttttgtggctgatgcacagggagagtacaagagcaggccatcaatccacatggatgcttacagatgggtaaagagagacagttaccttcctgttggaagtcaaaacctaaaggctaccactaaagccaagctgcggtacgatcctattgaactggatcctgaggacatgtgccgcatggctagtgaacaaccccaggaattgtctaattactcagtatctgatgctgttgccacttattacctttacatgaagtatgtccatcccttcatatttgcactgtgcaccattattccaatggaaccagatgaggttctaagaaaaggatcaggaactttgtgtgaagctcttctgatggtgcaagccttccatgcaaacattatttatccaaacaaacaggagcaggtgtttaacaagctgaccaatgatggtcatgttttggactctgagacgtatgttggaggccatgttgaagcactggagtctggtgtctttagaagtgacattccttgcagattcagattggttccagatgcttttcagaaactgattgataatgtggaaagcacaatgcgacatgcaattgttgaggaggaaaatattcccatggagactgttacaaacttcgatgaggtttgtgctgaaatcaaagacaagctggggagtttacgtgacacacctgcaagactggagaatccactgatctatcatctcgatgtgggtgctatgtaccctaacatcattctcaccaacagacttcagccatctgccatggtagatgaggcaacttgtgctgcgtgtgacttcaacaagccaggagcaagatgccaaagagtgatgaactggacgtggagaggagactttatgccagcaagtcgcaatgaataccaaaccatcaaacagcaactggaagtagaaaaaattcctggccttaatccaggggatccccctcgatcatttcactctctcacccttgctgaacaagctcagatggagaaaaagagattacaagattattgccataaagcttacaaaagagtgcgcgtgagcaaagaagaaactcgcaacacaatgatttgtcagcgggagaactcattttatgtcgacactgtgcgagcgtttcgtgatcgccgttatgaattcaagggattgctcaaggtctggaaacgtaaacttggagcagcaatgcaaagtggtgatgctgaggagatcaaaagttgtaaaagcaaagagattttgtatgattctcttcaactggcccacaagtgtattttgaactcattttatggttacgtcatgagaaagggtgcacgatggtattccatggagatggctggaattgtttgtcacactggagcaaacattatcagacaagccagagaaattgtggaacaaattggacgcccccttgaattggacacagatggaatctggtgtgttctgccagcaagttttcctgaaaacttccagattacaacaaacaatcctaagaagagcaaggtggcaatatcttaccctggagccatgctgaacatcatggttaagaaccattacaccaatgatcagtaccatgaacttacagatgcagataatctgacatatgaaattaggagtgagaattcaatcttttttgaggttgatgggccctacaaggcaatgattcttccagcctctaaagaagaagggaagaaactaaagaaaaggtacgctgttttcaatgatgatggctcccttgctgagttgaaaggatttgaagtgaagcgccgtggtgagctacagctggtgaagattttccagtcctctgtatttgaagcttttcttcaagggaagtcattggatgaagtatatgcagcagtagctaaagttgcaaactattggcttgatgttctttacagtaag

Transcript

evm.model.Ap8.475

ATGGTTCTCCTGAACAGTGGCAAAAGAAAGAAAGGAGATGGCGAGGAAAGCGAAGGAAACAGTTCGCGATCGCGCTCAAGGCCTGATGAAGGAAGCTCGACGGAGGCAAGAGTTCTTAGGATTCAGTCGAACGACACACTCGATGTTAAGTATGGGTTTGATCGCTACAAGGATCCAGTTGATAGGCTAGGATGGCTTATCAACATGCACCCAACAGAGATCATTGATGATGACAAGAAGTTGGTCAGTGCTGTGGATCTTTATTTCATTCAAGATGATGGAGGACGTTTCAGGGTGCCATTGCCTTACAAACCTTATTTCTACATTCTTGCAAAGAAAGATACTGATCGTGAAGTGGCAACATTCTTGAACAGAAAGTTTGGAGGATTGATATCAAGTATTGAAACAGTTGCAAAAGAAGATCTGGATTTGAACAACCACCTTGTTGGACTGAAAAGAAATTACATCAAGTTATCATTTCTTACTGTGAATGACTTGATGAAAGTTAAAAGGGAAATCATGCCAGCTGTCCGTAAGAACAAAGAACAGGCCAAGACAAATGCTGCTTACAACATTGTTATGGGTGCAGATATGAAGGAGGAGGAAATGATTGCAGCTAACAGAAGAAATGCTGATCAAATGGCAAATGTTATTGATATCAGGGAATATGATGTGCCCTACCATGTTAGAGCAGCCATTGATCTCAAGATTTTTGTGGGTCACTGGTACAATGTGAAAGTTCGTGGTGGGATTCATGCTGAGATTAGCAGGAGAGATGACCTGTTGGACAGACCAGAACCTGTTGTACTGGCATTTGATATAGAGACTACTAAACTGCCGCTCAAATTTCCTGACTCCAGCACAGACTCCATTATGATGATTTCTTACATGATTGATGGCCAGGGCTATTTGATCATTAACAGAGAAATAGTTTCTGAAGACATAGAAGATTTTGAGTACACACCAAAACCTGAGTATGAAGGACAGTTTACAGTTATAAATGAGCCAGATGAGTCCACCCTCATACAGCGTTTCTTTGAGCACATTCTTGAAGTCAAACCAAACATCTTTGTAACATACAATGGAGATTCTTTTGATTGGCCATTTGTTGAGGCCCGTGCAGCTCACCATGGAATCAACATGTACGATGAAATTGGTTTTGTGGCTGATGCACAGGGAGAGTACAAGAGCAGGCCATCAATCCACATGGATGCTTACAGATGGGTAAAGAGAGACAGTTACCTTCCTGTTGGAAGTCAAAACCTAAAGGCTACCACTAAAGCCAAGCTGCGGTACGATCCTATTGAACTGGATCCTGAGGACATGTGCCGCATGGCTAGTGAACAACCCCAGGAATTGTCTAATTACTCAGTATCTGATGCTGTTGCCACTTATTACCTTTACATGAAGTATGTCCATCCCTTCATATTTGCACTGTGCACCATTATTCCAATGGAACCAGATGAGGTTCTAAGAAAAGGATCAGGAACTTTGTGTGAAGCTCTTCTGATGGTGCAAGCCTTCCATGCAAACATTATTTATCCAAACAAACAGGAGCAGGTGTTTAACAAGCTGACCAATGATGGTCATGTTTTGGACTCTGAGACGTATGTTGGAGGCCATGTTGAAGCACTGGAGTCTGGTGTCTTTAGAAGTGACATTCCTTGCAGATTCAGATTGGTTCCAGATGCTTTTCAGAAACTGATTGATAATGTGGAAAGCACAATGCGACATGCAATTGTTGAGGAGGAAAATATTCCCATGGAGACTGTTACAAACTTCGATGAGGTTTGTGCTGAAATCAAAGACAAGCTGGGGAGTTTACGTGACACACCTGCAAGACTGGAGAATCCACTGATCTATCATCTCGATGTGGGTGCTATGTACCCTAACATCATTCTCACCAACAGACTTCAGCCATCTGCCATGGTAGATGAGGCAACTTGTGCTGCGTGTGACTTCAACAAGCCAGGAGCAAGATGCCAAAGAGTGATGAACTGGACGTGGAGAGGAGACTTTATGCCAGCAAGTCGCAATGAATACCAAACCATCAAACAGCAACTGGAAGTAGAAAAAATTCCTGGCCTTAATCCAGGGGATCCCCCTCGATCATTTCACTCTCTCACCCTTGCTGAACAAGCTCAGATGGAGAAAAAGAGATTACAAGATTATTGCCATAAAGCTTACAAAAGAGTGCGCGTGAGCAAAGAAGAAACTCGCAACACAATGATTTGTCAGCGGGAGAACTCATTTTATGTCGACACTGTGCGAGCGTTTCGTGATCGCCGTTATGAATTCAAGGGATTGCTCAAGGTCTGGAAACGTAAACTTGGAGCAGCAATGCAAAGTGGTGATGCTGAGGAGATCAAAAGTTGTAAAAGCAAAGAGATTTTGTATGATTCTCTTCAACTGGCCCACAAGTGTATTTTGAACTCATTTTATGGTTACGTCATGAGAAAGGGTGCACGATGGTATTCCATGGAGATGGCTGGAATTGTTTGTCACACTGGAGCAAACATTATCAGACAAGCCAGAGAAATTGTGGAACAAATTGGACGCCCCCTTGAATTGGACACAGATGGAATCTGGTGTGTTCTGCCAGCAAGTTTTCCTGAAAACTTCCAGATTACAACAAACAATCCTAAGAAGAGCAAGGTGGCAATATCTTACCCTGGAGCCATGCTGAACATCATGGTTAAGAACCATTACACCAATGATCAGTACCATGAACTTACAGATGCAGATAATCTGACATATGAAATTAGGAGTGAGAATTCAATCTTTTTTGAGGTTGATGGGCCCTACAAGGCAATGATTCTTCCAGCCTCTAAAGAAGAAGGGAAGAAACTAAAGAAAAGGTACGCTGTTTTCAATGATGATGGCTCCCTTGCTGAGTTGAAAGGATTTGAAGTGAAGCGCCGTGGTGAGCTACAGCTGGTGAAGATTTTCCAGTCCTCTGTATTTGAAGCTTTTCTTCAAGGGAAGTCATTGGATGAAGTATATGCAGCAGTAGCTAAAGTTGCAAACTATTGGCTTGATGTTCTTTACAGTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07864	DNA polymerase epsilon catalytic subunit A OS=Homo sapiens OX=9606 GN=POLE PE=1 SV=5
Q9WVF7	DNA polymerase epsilon catalytic subunit A OS=Mus musculus OX=10090 GN=Pole PE=1 SV=3
Q9VCN1	DNA polymerase epsilon catalytic subunit 1 OS=Drosophila melanogaster OX=7227 GN=PolE1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002978 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03104 all species →	DNA_pol_B_exo1	DNA polymerase family B, exonuclease domain	Family	Interproscan
PF00136 all species →	DNA_pol_B	DNA polymerase family B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042087 all species →	Homologous_superfamily	DNA polymerase family B, thumb domain	Interproscan
IPR029703 all species →	Family	DNA polymerase epsilon catalytic subunit	Interproscan
IPR006133 all species →	Domain	DNA-directed DNA polymerase, family B, exonuclease domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR006172 all species →	Family	DNA-directed DNA polymerase, family B	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR006134 all species →	Domain	DNA-directed DNA polymerase, family B, multifunctional domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10670 all species →	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006272 all species →	Biological Process	leading strand elongation	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006287 all species →	Biological Process	base-excision repair, gap-filling	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0008622 all species →	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0045004 all species →	Biological Process	DNA replication proofreading	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.475.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.