Detailed information of evm.model.Ap8.532 in Astrangia poculata

Genomic Location: Ap8:5774297...5778458
NR annotation: KXJ08095.1, Calcium-responsive transcription factor [Exaiptasia diaphana]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000144 (this species only)
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21056
all species →		ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF00628
all species →		PHDPHD-fingerDomainInterproscan
PF04434
all species →		SWIMSWIM zinc fingerDomainInterproscan
PF15299
all species →		ALS2CR8Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048324
all species →		DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR006564
all species →		DomainZinc finger, PMZ-typeInterproscan
IPR007527
all species →		DomainZinc finger, SWIM-typeInterproscan
IPR019787
all species →		DomainZinc finger, PHD-fingerInterproscan
IPR029309
all species →		FamilyCalcium-responsive transcription factorInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47456
all species →		PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap8.532.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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