Gene detail

Detailed information of evm.model.Ap8.551 in Astrangia poculata

Genomic Location: Ap8:5938218...5945535
NR annotation: XP_020611938.1, uncharacterized protein LOC110050360 isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.551

atgtttgttttaggtttgccgcgcagacgctcacaatcgaccgctgcaacctcgcacctggagcagacagtgcctccagaaattctagcacgaggacctttggccttggaagcctacaacaaggccattactgaagggaggacatgtgatcagagggtgccaataatgattatcggacaggaccactcaggaaagaccagcttaaagaagtcacttatgggaaaacctttcaacccagatgaggacagcactacagggatagaggtcgatccttcttatttcaaagtttcaactgagatctggaaagcagaagagaaggacaaagaaataaattctgagaaatctatttcctacgagcaccatgcagcgcgattaactgtcgaaaatttgaggcaggaaaaaagcccctctaaggaaaagggaatatttgaaaagttttcagaacttttcgatttttataaggtgcataatgcgacaacccagggctctggtatctcagaagactcgctatatagtgagacgtccggatcctctgttcagacatttagtaaccaagaacccagggacagcgtacctagtatgccagaagatatagcggctaaggtggaattgatgctgcaatatgataggttggaagataaagaagacctatattcagttttgtgggattttggtggacaatccgtttactataccactcaccctctttttctcacttcaagagcaatctttcttctagtaaatgacctcagccggaatccacatgaaagagccaaatcagttgtaaagcaaggaatgtttactaaaatcgaggacatctttgattacaaaaccaatttggattttctcgatttttggatgtcgtctgttgcttccctaggcattgaagaaaacagtaatcaaacaggatctagatctgaagtattgccagatacacttcccccagttatcttggtgtgcactcatgctgatacaccttatggtggcggtgatcctagtacactggccaataaagtatttggttctctacagaccaagccatacagaaaccacttatatgacgatgtctttgttgtggataacaccaagtctggacacgaatctgagtgtccagaagtcgtacgtttgcgcgaggaagtacttgccgttgctaaggagctaccacagatgaaagaagccattccaatcaagtggttacgatatgaaaaggctcttcaagtcatgaaagaagatggtcacaaatacatccttctcgacagagcaaaacaaattgcgtccgaagtatgtaatgttgttgacgagaaacaattccatgcacttctgaactttttgaatgaccagagaattttgattcactttgatgacactcctgagctgaacagattggtcgtcttagaccctcagtggttgattgacgtgttcaaggaggtaataaccgttaggccatatcacggtaaagagagaaaatttaaagggctatggtgtaagctagagagagaaggaatcctggaggaagaacttttagaacatgtttggggtcctttatttgacagcaaagaaacatctcaaagtcttattgcaatcatggaaaaattcagcttactttgtcctttgccttcatctcatgcttcttgtagtaagcagtacctaattccatccatgttgatgtctcatccaccagagggtatagtagatctgattaagtctgcgcaaataccttctctttttcttaaatttaaatctggtcatgttccgcctagcttgtttccccgactggtactgcagttttttcagtgggctaaagacgaatgtgtgagcccagtggcccctcagttgcaccagaattttgccagattttacacctctgaagaggaaaactgctctgtagtccttctgtgtcattcattttccattgaagttgttgttcatcgagggaatgacagtcttgacttggcagaaagtttacaatcaaagttgactttgtcttcagatgccagccaagacacctttgacgtgacatgtgcacgagcagtgcgtaggcagctaggattaatgctcgagtccatgcgcaacgagttctgctggctgaagaatatgagatacgaagtgagcttcatatgcccagtctgttgtcagggaggttccgttaactactgtcgcactcattgtgcacaaggttgtaagcaagaggagtgcttgcacttctggtccgactcacagctttgttacgccaagagtatctcttgcacaaagtctgccgttgcacagaataacagagttccaatcgaacagtttgcaccatggctgttacctcaaagaaatcagcttacagctaatgaacatgatggcaacaattgcaatacagcttctacaaaagcaagtaaagaagttgcccttcctgttgaggttcaagaatcccttttgtcacagtcgtgtgacgccaaagaaattgttcttcagctgggagagacgatgcagttagaccagtcctctctggaagagcctaagcctgagaccaagacattgatccgttgcttggcgaggaaagctaaagattcaaacaggcttgacgtgttcaaacatttgagagagattacaccagctggaacgacgggtcctctgttgcctgaaaaccttgatatccggggtatcccttattccaagggaaaggaacttacaatcgacttgtgtggcggagatgattggaaggtggttgccgaggctctgggcttgactccacaagagattcgtttccttgacaaacgtactttgaacccacttgatgctgctctggcctttattgctaaacagcgccacataaccgttggtgagctgtacgacttgttaaacgaacgtggttttcctatgctagctgatcttttgtag

Transcript

evm.model.Ap8.551

ATGTTTGTTTTAGGTTTGCCGCGCAGACGCTCACAATCGACCGCTGCAACCTCGCACCTGGAGCAGACAGTGCCTCCAGAAATTCTAGCACGAGGACCTTTGGCCTTGGAAGCCTACAACAAGGCCATTACTGAAGGGAGGACATGTGATCAGAGGGTGCCAATAATGATTATCGGACAGGACCACTCAGGAAAGACCAGCTTAAAGAAGTCACTTATGGGAAAACCTTTCAACCCAGATGAGGACAGCACTACAGGGATAGAGGTCGATCCTTCTTATTTCAAAGTTTCAACTGAGATCTGGAAAGCAGAAGAGAAGGACAAAGAAATAAATTCTGAGAAATCTATTTCCTACGAGCACCATGCAGCGCGATTAACTGTCGAAAATTTGAGGCAGGAAAAAAGCCCCTCTAAGGAAAAGGGAATATTTGAAAAGTTTTCAGAACTTTTCGATTTTTATAAGGTGCATAATGCGACAACCCAGGGCTCTGGTATCTCAGAAGACTCGCTATATAGTGAGACGTCCGGATCCTCTGTTCAGACATTTAGTAACCAAGAACCCAGGGACAGCGTACCTAGTATGCCAGAAGATATAGCGGCTAAGGTGGAATTGATGCTGCAATATGATAGGTTGGAAGATAAAGAAGACCTATATTCAGTTTTGTGGGATTTTGGTGGACAATCCGTTTACTATACCACTCACCCTCTTTTTCTCACTTCAAGAGCAATCTTTCTTCTAGTAAATGACCTCAGCCGGAATCCACATGAAAGAGCCAAATCAGTTGTAAAGCAAGGAATGTTTACTAAAATCGAGGACATCTTTGATTACAAAACCAATTTGGATTTTCTCGATTTTTGGATGTCGTCTGTTGCTTCCCTAGGCATTGAAGAAAACAGTAATCAAACAGGATCTAGATCTGAAGTATTGCCAGATACACTTCCCCCAGTTATCTTGGTGTGCACTCATGCTGATACACCTTATGGTGGCGGTGATCCTAGTACACTGGCCAATAAAGTATTTGGTTCTCTACAGACCAAGCCATACAGAAACCACTTATATGACGATGTCTTTGTTGTGGATAACACCAAGTCTGGACACGAATCTGAGTGTCCAGAAGTCGTACGTTTGCGCGAGGAAGTACTTGCCGTTGCTAAGGAGCTACCACAGATGAAAGAAGCCATTCCAATCAAGTGGTTACGATATGAAAAGGCTCTTCAAGTCATGAAAGAAGATGGTCACAAATACATCCTTCTCGACAGAGCAAAACAAATTGCGTCCGAAGTATGTAATGTTGTTGACGAGAAACAATTCCATGCACTTCTGAACTTTTTGAATGACCAGAGAATTTTGATTCACTTTGATGACACTCCTGAGCTGAACAGATTGGTCGTCTTAGACCCTCAGTGGTTGATTGACGTGTTCAAGGAGGTAATAACCGTTAGGCCATATCACGGTAAAGAGAGAAAATTTAAAGGGCTATGGTGTAAGCTAGAGAGAGAAGGAATCCTGGAGGAAGAACTTTTAGAACATGTTTGGGGTCCTTTATTTGACAGCAAAGAAACATCTCAAAGTCTTATTGCAATCATGGAAAAATTCAGCTTACTTTGTCCTTTGCCTTCATCTCATGCTTCTTGTAGTAAGCAGTACCTAATTCCATCCATGTTGATGTCTCATCCACCAGAGGGTATAGTAGATCTGATTAAGTCTGCGCAAATACCTTCTCTTTTTCTTAAATTTAAATCTGGTCATGTTCCGCCTAGCTTGTTTCCCCGACTGGTACTGCAGTTTTTTCAGTGGGCTAAAGACGAATGTGTGAGCCCAGTGGCCCCTCAGTTGCACCAGAATTTTGCCAGATTTTACACCTCTGAAGAGGAAAACTGCTCTGTAGTCCTTCTGTGTCATTCATTTTCCATTGAAGTTGTTGTTCATCGAGGGAATGACAGTCTTGACTTGGCAGAAAGTTTACAATCAAAGTTGACTTTGTCTTCAGATGCCAGCCAAGACACCTTTGACGTGACATGTGCACGAGCAGTGCGTAGGCAGCTAGGATTAATGCTCGAGTCCATGCGCAACGAGTTCTGCTGGCTGAAGAATATGAGATACGAAGTGAGCTTCATATGCCCAGTCTGTTGTCAGGGAGGTTCCGTTAACTACTGTCGCACTCATTGTGCACAAGGTTGTAAGCAAGAGGAGTGCTTGCACTTCTGGTCCGACTCACAGCTTTGTTACGCCAAGAGTATCTCTTGCACAAAGTCTGCCGTTGCACAGAATAACAGAGTTCCAATCGAACAGTTTGCACCATGGCTGTTACCTCAAAGAAATCAGCTTACAGCTAATGAACATGATGGCAACAATTGCAATACAGCTTCTACAAAAGCAAGTAAAGAAGTTGCCCTTCCTGTTGAGGTTCAAGAATCCCTTTTGTCACAGTCGTGTGACGCCAAAGAAATTGTTCTTCAGCTGGGAGAGACGATGCAGTTAGACCAGTCCTCTCTGGAAGAGCCTAAGCCTGAGACCAAGACATTGATCCGTTGCTTGGCGAGGAAAGCTAAAGATTCAAACAGGCTTGACGTGTTCAAACATTTGAGAGAGATTACACCAGCTGGAACGACGGGTCCTCTGTTGCCTGAAAACCTTGATATCCGGGGTATCCCTTATTCCAAGGGAAAGGAACTTACAATCGACTTGTGTGGCGGAGATGATTGGAAGGTGGTTGCCGAGGCTCTGGGCTTGACTCCACAAGAGATTCGTTTCCTTGACAAACGTACTTTGAACCCACTTGATGCTGCTCTGGCCTTTATTGCTAAACAGCGCCACATAACCGTTGGTGAGCTGTACGACTTGTTAAACGAACGTGGTTTTCCTATGCTAGCTGATCTTTTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1ZXD6	Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum OX=44689 GN=roco5 PE=3 SV=1
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2
Q54WS5	Probable serine/threonine-protein kinase roco6 OS=Dictyostelium discoideum OX=44689 GN=roco6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47679 all species →	PROTEIN TORNADO 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.551.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.