Genomic Location: Ap8:6678508...6685875
NR annotation: CAH3119839.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.617 |
| Transcript |
| evm.model.Ap8.617 |
| Protein |
| evm.model.Ap8.617 |
| UniProt accession | Description |
|---|---|
| Q9JJZ8 | Cyclic nucleotide-gated channel alpha-3 OS=Mus musculus OX=10090 GN=Cnga3 PE=1 SV=2 |
| Q9ER33 | Cyclic nucleotide-gated channel alpha-3 OS=Rattus norvegicus OX=10116 GN=Cnga3 PE=1 SV=1 |
| Q16281 | Cyclic nucleotide-gated channel alpha-3 OS=Homo sapiens OX=9606 GN=CNGA3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000765 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00027 all species → | cNMP_binding | Cyclic nucleotide-binding domain | Domain | Interproscan |
| PF00520 all species → | Ion_trans | Ion transport protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000595 all species → | Domain | Cyclic nucleotide-binding domain | Interproscan |
| IPR050866 all species → | Family | Cyclic Nucleotide-Gated Cation Channel | Interproscan |
| IPR014710 all species → | Homologous_superfamily | RmlC-like jelly roll fold | Interproscan |
| IPR018490 all species → | Homologous_superfamily | Cyclic nucleotide-binding domain superfamily | Interproscan |
| IPR018488 all species → | Conserved_site | Cyclic nucleotide-binding, conserved site | Interproscan |
| IPR005821 all species → | Domain | Ion transport domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45638 all species → | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005223 all species → | Molecular Function | intracellularly cGMP-activated cation channel activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0017071 all species → | Cellular Component | intracellular cyclic nucleotide activated cation channel complex | Interproscan |
| GO:0044877 all species → | Molecular Function | protein-containing complex binding | Interproscan |
| GO:0098655 all species → | Biological Process | monoatomic cation transmembrane transport | Interproscan |
| GO:0005216 all species → | Molecular Function | monoatomic ion channel activity | Interproscan |
| GO:0006811 all species → | Biological Process | monoatomic ion transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04950 | CNGA3; cyclic nucleotide gated channel alpha 3 | - | Ion channels | ko04040 | deepkoala |
Transcript abundance of evm.model.Ap8.617 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
