Detailed information of evm.model.Ap8.62 in Astrangia poculata

Genomic Location: Ap8:718263...726427
NR annotation: CAH3194631.1, unnamed protein product [Porites evermanni]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99J62Replication factor C subunit 4 OS=Mus musculus OX=10090 GN=Rfc4 PE=1 SV=1
P35249Replication factor C subunit 4 OS=Homo sapiens OX=9606 GN=RFC4 PE=1 SV=2
Q93ZX1Replication factor C subunit 4 OS=Arabidopsis thaliana OX=3702 GN=RFC4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001127 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13177
all species →		DNA_pol3_delta2DNA polymerase III, delta subunitDomainInterproscan
PF08542
all species →		Rep_fac_CReplication factor C C-terminal domainDomainInterproscan
PF03215
all species →		Rad17Rad17 P-loop domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013748
all species →		DomainReplication factor C, C-terminalInterproscan
IPR050238
all species →		FamilyDNA Replication and Repair Clamp Loader ComplexInterproscan
IPR047854
all species →		DomainReplication factor C, lid domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR008921
all species →		Homologous_superfamilyDNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11669
all species →		REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003689
all species →		Molecular FunctionDNA clamp loader activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005663
all species →		Cellular ComponentDNA replication factor C complexInterproscan
GO:0006261
all species →		Biological ProcessDNA-templated DNA replicationInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10755RFC2_4; replication factor C subunit 2/4-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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