Gene detail

Detailed information of evm.model.Ap8.714 in Astrangia poculata

Genomic Location: Ap8:7832688...7841249
NR annotation: KAG5712696.1, hypothetical protein BaRGS_029751 [Batillaria attramentaria]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.714

atggcgtccctgttaagcctcaacgatgactgtctgcatagaattgtgtcatatttagacgatccttgctccttttacagcattgctctcagctgcaagagacttctgcaagtgactactggcacgagggatgtagtacattcaaagcttttgcgatcaaaagcagagttttacatcaagagttacttggtcgatattagcaatcatggcagagctcggggtatccataggaaaaagttcgacgacaaatactgcaaattaaacgaacttcttaaaggttctgcacgccttacaggagcaaaaggaatactttcctacgctaaagtgattgatgtctggcagaaaaacggccctgtggtcgccaaactgtttacgtggatcaggaatcaagaagccggtaaacgagagggctggccgcgagcaacttgcttcactcaatggcagagtgtaactctccatttaccgacctgcaataagaacataaagatcaatactacgtacttccatgattatattggcaatttcagaaatgagctgagcatctatgtattctgtggcggttttggaggaggtcgcttctgtcggccgccgacttgcaagccttgtctcctctttcttctcttaccggccttcggccggctaaatcagttaaaaaagcgcttaaaacggcccgcgcaggcgactggagagcagctggtttactctgggcatgaagacgaacaacatgcacacacggaaggagtggcgtttatgttaagcgagtcagcagcaaaggccttgactgaatggaatccagtgtcaccaaggattatcacagcaagatttaactccaagggcagaaaggtcaccatcataaactgttatgccccaactaacaccgcagcagatgaccagaaagaagaattttatagcagtctccaaggtgttttagatcacataccaagacgagacatcaaaattcttttgggtgacttcaacgccaagataggtcctgacaacaccggaaaggagagggtcatgggttgccatgggttgggctgcatgagcgaaaatggagaacggtttaccgatttttgtgctttcaatgacctagtcattggtggaagcatttttccccacagagccactcataaagccacctggatatctcccgatggacgaacggcaaatcagatagaccatattacaattgccaggaaatggagatcgagtttgttggacgtgagagtaaagagaggggcagacattgcctcagaccaccatcttctactggggacctttaaggtgaaacttagggcataccgcgacccttcagctagacctcactgcaaatacaacatccccaatctcagttgcagtgaaacagcgaagatgttcaattgcacagtaaagaacaagttctccgcccttgaatttgtggatgacgatctcaacaatcactgggtaggattgaaaaagacgtggcaagagtcatgcgatgaagtcctaggtagaagggcgagtaaccgaaaggaatggctgtccaacgaaacttggtctctgatcctgcagaggaaaggtgttaaggaagagatcaatggatgcaaagagcaggacagacaaagggacttaacatcacggtactggaaattaaacaaggaggtaaggaagaatgctagaaaggacaagaaagaattcttcaatgctcttgcaactgaagctgagactgcagcagggcagcgtaacatgaagaggttatacgaaataactagaacgatgtcaggaaagaaaagtaaacagacaaggccagttaagaacaaggaaggcaggaccatctccacagagccagagcaaagggcgagatgggcagaacatttccatgacatcttaaatagaccacctcctcctgttacgccaggctttattgaaacaaatggaccccttctaactgtcagcatccatccaccatccaaagcagagattgttagagctgtgaaacaactgaagaatgggaaggcagcaggaccagacgggattccgcctgaagcactcaaaatcgatcctaacaacacagcagaaatgctacatccacttttccttaagatctgggaagcagagaaagttccaacagaatggaagcatggttatctggtgaagctgcccaaaaagggagatcttggactctgcaacaactggcgtggaattatgcttctctccatcccaagcaaggtattctgccgcattatccttgaaaggcttaaggacgccctggacaaacaactgcgatgtaatcaggcagggtttaggaaagataaatcctgcactgaccacattgccactctaaggataatcatcgaacaatccaacgaatggcagactccattatacatgaatttcatcgacttcgaaaaggcttttgacagtgttgataggaacatcatctggcaactcatgcatcactatggaattccatcaaagttcatcaagctgatacaggacctatacgagtcgtcatcttgtcaagtcattcacaacgggaagctgacagaatctttcgaaatgagcacaggagttcgtcaaggctgtttgttgtctccgatgatcttcatcatggtggtcgattggattatgagagaggtggaagatcagggtaagacaggaatccaatggacactaacaactcaactccatgatttggattatgcagacgacatatgccttctttcccaaaaactacaacatatgcaaaccaaaaccaacaacctggcacagattgcagagacaaccggcctcagggtgagcaaagagaaaaccaaagtgatgcgaaccaaaagcaagcagcggggcaaaattaagttgaatggcgaggatctggaagatgtcgaaagtttcacttatctaggcagtatcatcacagtcactggaggaactgaggaggatatgaagtgcagaattggtaaagcgagactggcgttcaacatgcttagaccagtctggaatgcctcctcgatttccaccaaaaccaagttgcgcatcttcaccactaatgtaaaagctacgcttctctatggctcagagacctggaaagtgacacaagctctatcaaataagctacaaagctttgtcaacaagtgcctcagaaagatcctcaagattcactggccagaaaagatcagtaacaaagaactttggagcaggacaggacaagagcacataccaactgagatagcaagaaggaaatgggcttggatcggccacacactaagaaaaccaggcactgacaccaccaagcaggccttaaagtggaatccgcagggaaaaagaaaggtgggaagacctgctaagacctggagaagatcaactgaggaggagttaaagaaagcgaacatcagctggaacgcagcagagaaggcggcagcaaatagagttcggtggcgaagcattgttgacgccctttgcttcaccaggagcctaaaggaataa

Transcript

evm.model.Ap8.714

ATGGCGTCCCTGTTAAGCCTCAACGATGACTGTCTGCATAGAATTGTGTCATATTTAGACGATCCTTGCTCCTTTTACAGCATTGCTCTCAGCTGCAAGAGACTTCTGCAAGTGACTACTGGCACGAGGGATGTAGTACATTCAAAGCTTTTGCGATCAAAAGCAGAGTTTTACATCAAGAGTTACTTGGTCGATATTAGCAATCATGGCAGAGCTCGGGGTATCCATAGGAAAAAGTTCGACGACAAATACTGCAAATTAAACGAACTTCTTAAAGGTTCTGCACGCCTTACAGGAGCAAAAGGAATACTTTCCTACGCTAAAGTGATTGATGTCTGGCAGAAAAACGGCCCTGTGGTCGCCAAACTGTTTACGTGGATCAGGAATCAAGAAGCCGGTAAACGAGAGGGCTGGCCGCGAGCAACTTGCTTCACTCAATGGCAGAGTGTAACTCTCCATTTACCGACCTGCAATAAGAACATAAAGATCAATACTACGTACTTCCATGATTATATTGGCAATTTCAGAAATGAGCTGAGCATCTATGTATTCTGTGGCGGTTTTGGAGGAGGTCGCTTCTGTCGGCCGCCGACTTGCAAGCCTTGTCTCCTCTTTCTTCTCTTACCGGCCTTCGGCCGGCTAAATCAGTTAAAAAAGCGCTTAAAACGGCCCGCGCAGGCGACTGGAGAGCAGCTGGTTTACTCTGGGCATGAAGACGAACAACATGCACACACGGAAGGAGTGGCGTTTATGTTAAGCGAGTCAGCAGCAAAGGCCTTGACTGAATGGAATCCAGTGTCACCAAGGATTATCACAGCAAGATTTAACTCCAAGGGCAGAAAGGTCACCATCATAAACTGTTATGCCCCAACTAACACCGCAGCAGATGACCAGAAAGAAGAATTTTATAGCAGTCTCCAAGGTGTTTTAGATCACATACCAAGACGAGACATCAAAATTCTTTTGGGTGACTTCAACGCCAAGATAGGTCCTGACAACACCGGAAAGGAGAGGGTCATGGGTTGCCATGGGTTGGGCTGCATGAGCGAAAATGGAGAACGGTTTACCGATTTTTGTGCTTTCAATGACCTAGTCATTGGTGGAAGCATTTTTCCCCACAGAGCCACTCATAAAGCCACCTGGATATCTCCCGATGGACGAACGGCAAATCAGATAGACCATATTACAATTGCCAGGAAATGGAGATCGAGTTTGTTGGACGTGAGAGTAAAGAGAGGGGCAGACATTGCCTCAGACCACCATCTTCTACTGGGGACCTTTAAGGTGAAACTTAGGGCATACCGCGACCCTTCAGCTAGACCTCACTGCAAATACAACATCCCCAATCTCAGTTGCAGTGAAACAGCGAAGATGTTCAATTGCACAGTAAAGAACAAGTTCTCCGCCCTTGAATTTGTGGATGACGATCTCAACAATCACTGGGTAGGATTGAAAAAGACGTGGCAAGAGTCATGCGATGAAGTCCTAGGTAGAAGGGCGAGTAACCGAAAGGAATGGCTGTCCAACGAAACTTGGTCTCTGATCCTGCAGAGGAAAGGTGTTAAGGAAGAGATCAATGGATGCAAAGAGCAGGACAGACAAAGGGACTTAACATCACGGTACTGGAAATTAAACAAGGAGGTAAGGAAGAATGCTAGAAAGGACAAGAAAGAATTCTTCAATGCTCTTGCAACTGAAGCTGAGACTGCAGCAGGGCAGCGTAACATGAAGAGGTTATACGAAATAACTAGAACGATGTCAGGAAAGAAAAGTAAACAGACAAGGCCAGTTAAGAACAAGGAAGGCAGGACCATCTCCACAGAGCCAGAGCAAAGGGCGAGATGGGCAGAACATTTCCATGACATCTTAAATAGACCACCTCCTCCTGTTACGCCAGGCTTTATTGAAACAAATGGACCCCTTCTAACTGTCAGCATCCATCCACCATCCAAAGCAGAGATTGTTAGAGCTGTGAAACAACTGAAGAATGGGAAGGCAGCAGGACCAGACGGGATTCCGCCTGAAGCACTCAAAATCGATCCTAACAACACAGCAGAAATGCTACATCCACTTTTCCTTAAGATCTGGGAAGCAGAGAAAGTTCCAACAGAATGGAAGCATGGTTATCTGGTGAAGCTGCCCAAAAAGGGAGATCTTGGACTCTGCAACAACTGGCGTGGAATTATGCTTCTCTCCATCCCAAGCAAGGTATTCTGCCGCATTATCCTTGAAAGGCTTAAGGACGCCCTGGACAAACAACTGCGATGTAATCAGGCAGGGTTTAGGAAAGATAAATCCTGCACTGACCACATTGCCACTCTAAGGATAATCATCGAACAATCCAACGAATGGCAGACTCCATTATACATGAATTTCATCGACTTCGAAAAGGCTTTTGACAGTGTTGATAGGAACATCATCTGGCAACTCATGCATCACTATGGAATTCCATCAAAGTTCATCAAGCTGATACAGGACCTATACGAGTCGTCATCTTGTCAAGTCATTCACAACGGGAAGCTGACAGAATCTTTCGAAATGAGCACAGGAGTTCGTCAAGGCTGTTTGTTGTCTCCGATGATCTTCATCATGGTGGTCGATTGGATTATGAGAGAGGTGGAAGATCAGGGTAAGACAGGAATCCAATGGACACTAACAACTCAACTCCATGATTTGGATTATGCAGACGACATATGCCTTCTTTCCCAAAAACTACAACATATGCAAACCAAAACCAACAACCTGGCACAGATTGCAGAGACAACCGGCCTCAGGGTGAGCAAAGAGAAAACCAAAGTGATGCGAACCAAAAGCAAGCAGCGGGGCAAAATTAAGTTGAATGGCGAGGATCTGGAAGATGTCGAAAGTTTCACTTATCTAGGCAGTATCATCACAGTCACTGGAGGAACTGAGGAGGATATGAAGTGCAGAATTGGTAAAGCGAGACTGGCGTTCAACATGCTTAGACCAGTCTGGAATGCCTCCTCGATTTCCACCAAAACCAAGTTGCGCATCTTCACCACTAATGTAAAAGCTACGCTTCTCTATGGCTCAGAGACCTGGAAAGTGACACAAGCTCTATCAAATAAGCTACAAAGCTTTGTCAACAAGTGCCTCAGAAAGATCCTCAAGATTCACTGGCCAGAAAAGATCAGTAACAAAGAACTTTGGAGCAGGACAGGACAAGAGCACATACCAACTGAGATAGCAAGAAGGAAATGGGCTTGGATCGGCCACACACTAAGAAAACCAGGCACTGACACCACCAAGCAGGCCTTAAAGTGGAATCCGCAGGGAAAAAGAAAGGTGGGAAGACCTGCTAAGACCTGGAGAAGATCAACTGAGGAGGAGTTAAAGAAAGCGAACATCAGCTGGAACGCAGCAGAGAAGGCGGCAGCAAATAGAGTTCGGTGGCGAAGCATTGTTGACGCCCTTTGCTTCACCAGGAGCCTAAAGGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16423	Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P0CV25	Secreted RxLR effector protein 78 OS=Plasmopara viticola OX=143451 GN=RXLR78 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20049 all species →	DUF6451	Domain of unknown function (DUF6451)	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR045609 all species →	Domain	Domain of unknown function DUF6451	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap8.714. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.714.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.