Genomic Location: Ap8:8392488...8427192
NR annotation: CAH3120109.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap8.779 |
| Transcript |
| evm.model.Ap8.779 |
| Protein |
| evm.model.Ap8.779 |
| UniProt accession | Description |
|---|---|
| Q9UKP5 | A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens OX=9606 GN=ADAMTS6 PE=1 SV=2 |
| Q8C9W3 | A disintegrin and metalloproteinase with thrombospondin motifs 2 OS=Mus musculus OX=10090 GN=Adamts2 PE=1 SV=2 |
| P79331 | A disintegrin and metalloproteinase with thrombospondin motifs 2 OS=Bos taurus OX=9913 GN=ADAMTS2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000160 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19030 all species → | TSP1_ADAMTS | Thrombospondin type 1 domain | Domain | Interproscan |
| PF01562 all species → | Pep_M12B_propep | Reprolysin family propeptide | Family | Interproscan |
| PF13688 all species → | Reprolysin_5 | Metallo-peptidase family M12 | Family | Interproscan |
| PF05986 all species → | ADAMTS_spacer1 | ADAM-TS Spacer 1 | Domain | Interproscan |
| PF19236 all species → | ADAMTS_CR_3 | ADAMTS cysteine-rich domain | Domain | Interproscan |
| PF00090 all species → | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| PF17771 all species → | ADAMTS_CR_2 | ADAMTS cysteine-rich domain 2 | Domain | Interproscan |
| PF00008 all species → | EGF | EGF-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR050439 all species → | Family | ADAMTS and ADAMTS-like | Interproscan |
| IPR024079 all species → | Homologous_superfamily | Metallopeptidase, catalytic domain superfamily | Interproscan |
| IPR000884 all species → | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR001590 all species → | Domain | Peptidase M12B, ADAM/reprolysin | Interproscan |
| IPR002870 all species → | Domain | Peptidase M12B, propeptide | Interproscan |
| IPR010294 all species → | Domain | ADAMTS/ADAMTS-like, Spacer 1 | Interproscan |
| IPR036383 all species → | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR045371 all species → | Domain | ADAMTS/ADAMTS-like, cysteine-rich domain 3 | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR013273 all species → | Family | ADAMTS/ADAMTS-like | Interproscan |
| IPR041645 all species → | Domain | ADAMTS, cysteine-rich domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13723 all species → | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0030198 all species → | Biological Process | extracellular matrix organization | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K08621 | ADAMTS6; a disintegrin and metalloproteinase with thrombospondin motifs 6 | EC:3.4.24.- | Peptidases and inhibitors | ko01002 | deepkoala |
Transcript abundance of evm.model.Ap8.779 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
