Gene detail

Detailed information of evm.model.Ap8.821 in Astrangia poculata

Genomic Location: Ap8:8875566...8884969
NR annotation: XP_020610655.1, arf-GAP domain and FG repeat-containing protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.821

atggcttctgccaagaaaaagcaggacgaaaagaacttaaaacttcttcgagacctcgcagctttaccccacaacaaaaaatgcttcgactgcggacaaaggggaccaacatatgtgaatacgaccataggatctttcgtctgtacatcgtgtagcggcattttaagaggattaaaccctcctcatcgagttaagtcaatttcgatgactagttttactccacaagaaatagaaagtctacaaggcacgggaaatgagtattgtaaaaaggtttggcttgggctgtggaactctacacaaccaacagaaccagaatctaaagatgaacaaaaggttaaggattttatggttcagaaatacgaacggaaaagatggtacattccgccacaacaagtcaacactagcaacacaagtcaggcggcaccagaacctaaaccactgaaacaacttttaggagaaaatacacctgctgttacagtacaagcacaagctacaagggagagacctcgtactggaagtcaaacgagtgggtcatcggtaccggtgtctgttgctcctcccccaggaatggtgcagaatgcagcccctcaaccagctccgcagccgaaagctccatcagtggatttacttggtgacctgggaggtgatccatttgctcaaccgcagccacagggtcagtttggatccccaccacagcaaggaggctttgccgcattcaatgcatttggagggcagccagcagctcctgctcagaatgcttttgatccatttggaacgacagcgccacagcctgctcaacaagcccagccagggtttgcagcatttggcacgccaccccagcaacaacctgcagctcaaccacaaccacaagcaagtttgtttgatgcttttgggtcttctccgccatcctctggggggttcaatgcctttggtgctccagcgtcatcagctccagctccagctcctcaaccagcagctaattctgggtttgggccgctggtgtcagcttctggaggctcagcaccccagagtgcaggagacaggtatgcagcactcagtgacttggacaacttgtttggtgcagcacccagcagcagcggcgcaagtatcagttcaggatcaggttttggctccactggttcttcgtcatttggaatgtctagcggaccaaaccccttctcaagtacgacatcaggtgcggcatcaggagggtttcagcaaccaaagcagcctcaacagcaacagccgtccaatccgtttcaaggtctgggtggaggttctgctggctttggacagctcaatggtcccacgaggagcatgagtcctgctagtagtatgtccgctacgtctggggcaggaagtggatttggaaacttcagcaccgctcagtcagcaggttcggcatttggaaaccagcctgcgagttcgggatttggtggacagccatccagtgcagcatttggaggcaaccaaccttctggtggaggatttggcagctttacgtcagcgcagccgcagtcatctttcggcggaaatcagcaaccaagctgggggagcatgggaggtcagcaaaacatggggggccaacaacccatgggcggccaacaacccatggggggccaaggtatgggtatgccatcaacatcgacacaacagaatcttagcttcggcggcgctggaatgacggcaatggcttggacacagtttggaaaaatgggaggtggccaaccgcaacaacaacaacaacaacccccagtgaggggtcaaatgaactttggtggaaatcaacccggctttggcagtcatcagggatttggtgctatgcagccagcatccgggttcggagcttcctcaggtggatttggagctaatcccatgtctggcggtggtggatttggagggggtcaacaacaggcttctggctttggaaatccaggtggcttcggtggacagccaagtagtggttttggcggtcaaggaggagcgtcatttggcggtaatatggcaggaatgggaggtggtcaatttggacagcagcagcaaatgcaacagtttggtggttggcaacagggtcaacaagccaacccatttatgaatgctggtgcacaacaggccatgcagagacatggacagtctacaaatccatttatgtag

Transcript

evm.model.Ap8.821

ATGGCTTCTGCCAAGAAAAAGCAGGACGAAAAGAACTTAAAACTTCTTCGAGACCTCGCAGCTTTACCCCACAACAAAAAATGCTTCGACTGCGGACAAAGGGGACCAACATATGTGAATACGACCATAGGATCTTTCGTCTGTACATCGTGTAGCGGCATTTTAAGAGGATTAAACCCTCCTCATCGAGTTAAGTCAATTTCGATGACTAGTTTTACTCCACAAGAAATAGAAAGTCTACAAGGCACGGGAAATGAGTATTGTAAAAAGGTTTGGCTTGGGCTGTGGAACTCTACACAACCAACAGAACCAGAATCTAAAGATGAACAAAAGGTTAAGGATTTTATGGTTCAGAAATACGAACGGAAAAGATGGTACATTCCGCCACAACAAGTCAACACTAGCAACACAAGTCAGGCGGCACCAGAACCTAAACCACTGAAACAACTTTTAGGAGAAAATACACCTGCTGTTACAGTACAAGCACAAGCTACAAGGGAGAGACCTCGTACTGGAAGTCAAACGAGTGGGTCATCGGTACCGGTGTCTGTTGCTCCTCCCCCAGGAATGGTGCAGAATGCAGCCCCTCAACCAGCTCCGCAGCCGAAAGCTCCATCAGTGGATTTACTTGGTGACCTGGGAGGTGATCCATTTGCTCAACCGCAGCCACAGGGTCAGTTTGGATCCCCACCACAGCAAGGAGGCTTTGCCGCATTCAATGCATTTGGAGGGCAGCCAGCAGCTCCTGCTCAGAATGCTTTTGATCCATTTGGAACGACAGCGCCACAGCCTGCTCAACAAGCCCAGCCAGGGTTTGCAGCATTTGGCACGCCACCCCAGCAACAACCTGCAGCTCAACCACAACCACAAGCAAGTTTGTTTGATGCTTTTGGGTCTTCTCCGCCATCCTCTGGGGGGTTCAATGCCTTTGGTGCTCCAGCGTCATCAGCTCCAGCTCCAGCTCCTCAACCAGCAGCTAATTCTGGGTTTGGGCCGCTGGTGTCAGCTTCTGGAGGCTCAGCACCCCAGAGTGCAGGAGACAGGTATGCAGCACTCAGTGACTTGGACAACTTGTTTGGTGCAGCACCCAGCAGCAGCGGCGCAAGTATCAGTTCAGGATCAGGTTTTGGCTCCACTGGTTCTTCGTCATTTGGAATGTCTAGCGGACCAAACCCCTTCTCAAGTACGACATCAGGTGCGGCATCAGGAGGGTTTCAGCAACCAAAGCAGCCTCAACAGCAACAGCCGTCCAATCCGTTTCAAGGTCTGGGTGGAGGTTCTGCTGGCTTTGGACAGCTCAATGGTCCCACGAGGAGCATGAGTCCTGCTAGTAGTATGTCCGCTACGTCTGGGGCAGGAAGTGGATTTGGAAACTTCAGCACCGCTCAGTCAGCAGGTTCGGCATTTGGAAACCAGCCTGCGAGTTCGGGATTTGGTGGACAGCCATCCAGTGCAGCATTTGGAGGCAACCAACCTTCTGGTGGAGGATTTGGCAGCTTTACGTCAGCGCAGCCGCAGTCATCTTTCGGCGGAAATCAGCAACCAAGCTGGGGGAGCATGGGAGGTCAGCAAAACATGGGGGGCCAACAACCCATGGGCGGCCAACAACCCATGGGGGGCCAAGGTATGGGTATGCCATCAACATCGACACAACAGAATCTTAGCTTCGGCGGCGCTGGAATGACGGCAATGGCTTGGACACAGTTTGGAAAAATGGGAGGTGGCCAACCGCAACAACAACAACAACAACCCCCAGTGAGGGGTCAAATGAACTTTGGTGGAAATCAACCCGGCTTTGGCAGTCATCAGGGATTTGGTGCTATGCAGCCAGCATCCGGGTTCGGAGCTTCCTCAGGTGGATTTGGAGCTAATCCCATGTCTGGCGGTGGTGGATTTGGAGGGGGTCAACAACAGGCTTCTGGCTTTGGAAATCCAGGTGGCTTCGGTGGACAGCCAAGTAGTGGTTTTGGCGGTCAAGGAGGAGCGTCATTTGGCGGTAATATGGCAGGAATGGGAGGTGGTCAATTTGGACAGCAGCAGCAAATGCAACAGTTTGGTGGTTGGCAACAGGGTCAACAAGCCAACCCATTTATGAATGCTGGTGCACAACAGGCCATGCAGAGACATGGACAGTCTACAAATCCATTTATGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K2K6	Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Agfg1 PE=1 SV=2
Q4KLH5	Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Agfg1 PE=1 SV=1
Q2TA45	Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus OX=9913 GN=AGFG1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007543 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR052248 all species →	Family	Arf-GAP domain and FG repeat-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46134 all species →	DRONGO, ISOFORM F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15044	AGFG1; Arf-GAP domain and FG repeats-containing protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.