Gene detail

Detailed information of evm.model.Ap8.85 in Astrangia poculata

Genomic Location: Ap8:936313...947129
NR annotation: XP_020601292.1, long-chain-fatty-acid--CoA ligase 4-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.85

atggagcgctccttcatggaaaacgtgtttctattcggcctgaatatggccggttggttatggggaatagtgagttttttaccgtggtactatctagtgggaaggaagcagtatcgacctcggaataaagttcaagcgaggcctgtgagtcaatttcctggagctccttatcgttgtgttgaacatttcgattcattggtgactactctatacgatggtgtcacaaccctggatcaactattcaagcgggctgtgaacttgtacccctatagaaaatgtctaggaacacgagaagtcatcaaagaggaagatgaaatgcaacctaatggtaaagtatttaagaaacttgtttgcggggaatacaactggttgacatatgccgaggttgatgccagagcaagagcatttggcagaggattggccacaataggacagcaactcaaggaaaacattgcaatattctctgaaacaaaagctgagtggatgatcgcagcacaaggatgctttgctcaaaactttccaattgttacagtttatgcgactctaggagatgaagcccttattcatggtatcaatgaatcagaagtaagatttatcatcactgatggctctctacttggcaagctttcagccgtgatcgacagactaccaaaacttgaacatattgtttaccttggaaatgtagttaagaaatcagcattgcttggcttttcaagaagaataaaaatccattcaatgcgcgaagttgaagagattggagaatcacacaatgacccatcattagttcgaagaggtccttccccagatgatgttgcagtcatcatgtacactagtggctcaacaggacttgctaaaggtgtaatcattcctcatggtgctttaatggctggtattgctggaattattgcaagagtacagcctgctcttagtgaaaaagacatctatgttggttatcttcctcttgcacatgtactggaacttgtggcagaaaatgcaatccttgctcatggggcatgtataggatattccaaccctctcaccctctctgatcagtcgtctaaaatcaagaaaggaactaaaggagacttatcagtgctcagaccaactctaatggctgcagttcctgttattatggacagaatcagacagaatgtcatggaaaaagtcaaggagggtcctcgtcttctgcaactattctttacatttgcttacagttacaagatgaagcaacttaagcttggctatgatactcctcttcttaacaaattcatcttctcaagatcatctctggtcgggcgagttttgagggtgcaccgctcaggaactgtctgcaatgcctgggacaggacaacagggcgtgtgggaccaccagtctcttcaacagagatcaagcttgttagctgggaagaaggaaactacactgtcagggataaacccaatcccagaggagaaattgtcattggaggcccaaatgtgacccggggctactttaaaaaccctgccaagacagcagaggactttgaagttgacagaaatggacagcgctggttccataccggtgatattggcgagttccatcctgatggctgtcttaaaattatagaccgcaagaaagatcttgtgaagcttcaggctggcgagtatgtgtcgcttggtaaagtcgaagcagctcttgcgcagagccagtacgtagagactatctgcgtatatgccgagagtttgtacaactatgtggtgtgccttgctgtaccacgccctaaacagctcaaggctctcgctgtgtcgcttggcatcttgactgatgactgggctgaacagtgcaggaacaaagccatcacagatgcagtcctgaaggatctgcaggctcttggcaaagcattgaaactggagaagtttgagattccgcaacgcctgaccctgtgcactgaacagtggactcctgaaacagagctcgtcacagctgctctgaagctcaaacgaaagaacatcacagttcattacaagcaggccttagatgccatgtacggcaaatga

Transcript

evm.model.Ap8.85

ATGGAGCGCTCCTTCATGGAAAACGTGTTTCTATTCGGCCTGAATATGGCCGGTTGGTTATGGGGAATAGTGAGTTTTTTACCGTGGTACTATCTAGTGGGAAGGAAGCAGTATCGACCTCGGAATAAAGTTCAAGCGAGGCCTGTGAGTCAATTTCCTGGAGCTCCTTATCGTTGTGTTGAACATTTCGATTCATTGGTGACTACTCTATACGATGGTGTCACAACCCTGGATCAACTATTCAAGCGGGCTGTGAACTTGTACCCCTATAGAAAATGTCTAGGAACACGAGAAGTCATCAAAGAGGAAGATGAAATGCAACCTAATGGTAAAGTATTTAAGAAACTTGTTTGCGGGGAATACAACTGGTTGACATATGCCGAGGTTGATGCCAGAGCAAGAGCATTTGGCAGAGGATTGGCCACAATAGGACAGCAACTCAAGGAAAACATTGCAATATTCTCTGAAACAAAAGCTGAGTGGATGATCGCAGCACAAGGATGCTTTGCTCAAAACTTTCCAATTGTTACAGTTTATGCGACTCTAGGAGATGAAGCCCTTATTCATGGTATCAATGAATCAGAAGTAAGATTTATCATCACTGATGGCTCTCTACTTGGCAAGCTTTCAGCCGTGATCGACAGACTACCAAAACTTGAACATATTGTTTACCTTGGAAATGTAGTTAAGAAATCAGCATTGCTTGGCTTTTCAAGAAGAATAAAAATCCATTCAATGCGCGAAGTTGAAGAGATTGGAGAATCACACAATGACCCATCATTAGTTCGAAGAGGTCCTTCCCCAGATGATGTTGCAGTCATCATGTACACTAGTGGCTCAACAGGACTTGCTAAAGGTGTAATCATTCCTCATGGTGCTTTAATGGCTGGTATTGCTGGAATTATTGCAAGAGTACAGCCTGCTCTTAGTGAAAAAGACATCTATGTTGGTTATCTTCCTCTTGCACATGTACTGGAACTTGTGGCAGAAAATGCAATCCTTGCTCATGGGGCATGTATAGGATATTCCAACCCTCTCACCCTCTCTGATCAGTCGTCTAAAATCAAGAAAGGAACTAAAGGAGACTTATCAGTGCTCAGACCAACTCTAATGGCTGCAGTTCCTGTTATTATGGACAGAATCAGACAGAATGTCATGGAAAAAGTCAAGGAGGGTCCTCGTCTTCTGCAACTATTCTTTACATTTGCTTACAGTTACAAGATGAAGCAACTTAAGCTTGGCTATGATACTCCTCTTCTTAACAAATTCATCTTCTCAAGATCATCTCTGGTCGGGCGAGTTTTGAGGGTGCACCGCTCAGGAACTGTCTGCAATGCCTGGGACAGGACAACAGGGCGTGTGGGACCACCAGTCTCTTCAACAGAGATCAAGCTTGTTAGCTGGGAAGAAGGAAACTACACTGTCAGGGATAAACCCAATCCCAGAGGAGAAATTGTCATTGGAGGCCCAAATGTGACCCGGGGCTACTTTAAAAACCCTGCCAAGACAGCAGAGGACTTTGAAGTTGACAGAAATGGACAGCGCTGGTTCCATACCGGTGATATTGGCGAGTTCCATCCTGATGGCTGTCTTAAAATTATAGACCGCAAGAAAGATCTTGTGAAGCTTCAGGCTGGCGAGTATGTGTCGCTTGGTAAAGTCGAAGCAGCTCTTGCGCAGAGCCAGTACGTAGAGACTATCTGCGTATATGCCGAGAGTTTGTACAACTATGTGGTGTGCCTTGCTGTACCACGCCCTAAACAGCTCAAGGCTCTCGCTGTGTCGCTTGGCATCTTGACTGATGACTGGGCTGAACAGTGCAGGAACAAAGCCATCACAGATGCAGTCCTGAAGGATCTGCAGGCTCTTGGCAAAGCATTGAAACTGGAGAAGTTTGAGATTCCGCAACGCCTGACCCTGTGCACTGAACAGTGGACTCCTGAAACAGAGCTCGTCACAGCTGCTCTGAAGCTCAAACGAAAGAACATCACAGTTCATTACAAGCAGGCCTTAGATGCCATGTACGGCAAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35547	Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus OX=10116 GN=Acsl4 PE=1 SV=2
O60488	Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens OX=9606 GN=ACSL4 PE=1 SV=2
Q9QUJ7	Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus OX=10090 GN=Acsl4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000650 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43272 all species →	LONG-CHAIN-FATTY-ACID--COA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001676 all species →	Biological Process	long-chain fatty acid metabolic process	Interproscan
GO:0004467 all species →	Molecular Function	long-chain fatty acid-CoA ligase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0035336 all species →	Biological Process	long-chain fatty-acyl-CoA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01897	ACSL, fadD; long-chain acyl-CoA synthetase	EC:6.2.1.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.