Gene detail

Detailed information of evm.model.Ap8.87 in Astrangia poculata

Genomic Location: Ap8:962039...983455
NR annotation: CAH3145375.1, unnamed protein product [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.87

atggcaggatcagatgaccggtttgcttttttggcggaatggtacgatcccagggcttcactcatgagaaagtatcaacttctttattatcccagcgattcctcagtagagatgtatgacataaagaaccgtcgtcttttcctgaagcgatcgatgatagatggcctccagcttcaccatctgttcattggagctgttattaacatccattctcgccagttatcaattacagactatgcagatgatcgtacgtcaaaccttctgagagacaagaatgagaaaacactagctatgataaaaccagatgctattgcacaaatggggagtataattgacatgatccatcagaaaggtttcctcatttgtcaggctaagatggtcagaatgacaagggatgaagcatcaatattctactcagaacacagagggaattcatttttcaattatttagtggaatttgtgacaagtggtcctgttgttgctatggagctgaagggtgcaaatgccattcaaaaatggcgggaactgttaggcccaacagactcagccactgcacggacccaagctccattgtcaattagagctaagtttgggacagacaatgcaaagaatgctgcacatggatcagactcttcagaatcagccaaaaaagaaattgactttttctttggtcgtccaacatttagtggaaaaaatactgctactttttcagactgcactctctgcataattaaaccccacaccatcattgaaggtctcactggcaaaatcatctcggccatcacaagcaagggatttgaaatatctgcagttcaaatgtttcacctggaaagagcaaatgctgaggaatttcacgatgtgtacaaaggtgttgtaaatgaatacaagagcatggttgaagaactgtgttgtggtccatgcctggccatggagataagagctcctgatgcccctgtcacattcagagagtttgttggcccttctgaccctgaaatcgctcgccacctacgaccaggaacattacgtgcaatgtttggcaaagataaaattaaaaacgctgtacattgcagtgatttacctgaagatggtctgatagaggtgcagtattttttcaagcttttgttaaatgttaacatgagggttgacagttggtggattaaaggaattctgttcctgtggttgtgccattttggctgttgttcatccgatgatgacaatcaagtttgtgtgcaaactcaatttaacagtacagaaaatactgactgttatgattatggctgggcaagttttggtaacctcattcgttccccatacataaagggcgttgtggtgctggctgatcccccgacagcatgtgactcagtgaagccccaaagtagttataatcaatctggttactctggaaattggtttcttctcattgatgtgggcaagtgtgagtttgatactaagggggccatggctactaaaggaggatttgatgccgctatcattaggagcctggagagtgatgttgttcagcccattggaggaggctcagataatagaaaagttaaagtgccagttgtttatgtagggaaggacactggtgaagtcctagaagataacgattttacaaaacaacagagcagtagaatccttcttaccccacaagaatttcctccaatatgggattatgagttctacatgattccatttgcaatcattgtaggaatctgttttattttgatggctatgtttatgattagtcgttactacagacactacctagaacagcgacgtaacaggctgtcgccaacaaatctgaggaagattccaacaaaaaagtttaaaaaaggtgatgattactatgatgtgtgtgctatttgtttggaggagtacaaagatggagaaaggctgcgaattcttccctgtgagcacgcctaccattgcaagtgtgtagatccgtggctgactgaagggaagcgaacatgtccagtgtgcaaacgacctgtatcaaatgacagcaaaagaagaaacagatctcggagaactgacgtggaggcagcaggggaatcaacaaatgaagctgatgaaaccactcctcttatagcatctacttctcaatcagccggcagctctaactccatgacggtgtag

Transcript

evm.model.Ap8.87

ATGGCAGGATCAGATGACCGGTTTGCTTTTTTGGCGGAATGGTACGATCCCAGGGCTTCACTCATGAGAAAGTATCAACTTCTTTATTATCCCAGCGATTCCTCAGTAGAGATGTATGACATAAAGAACCGTCGTCTTTTCCTGAAGCGATCGATGATAGATGGCCTCCAGCTTCACCATCTGTTCATTGGAGCTGTTATTAACATCCATTCTCGCCAGTTATCAATTACAGACTATGCAGATGATCGTACGTCAAACCTTCTGAGAGACAAGAATGAGAAAACACTAGCTATGATAAAACCAGATGCTATTGCACAAATGGGGAGTATAATTGACATGATCCATCAGAAAGGTTTCCTCATTTGTCAGGCTAAGATGGTCAGAATGACAAGGGATGAAGCATCAATATTCTACTCAGAACACAGAGGGAATTCATTTTTCAATTATTTAGTGGAATTTGTGACAAGTGGTCCTGTTGTTGCTATGGAGCTGAAGGGTGCAAATGCCATTCAAAAATGGCGGGAACTGTTAGGCCCAACAGACTCAGCCACTGCACGGACCCAAGCTCCATTGTCAATTAGAGCTAAGTTTGGGACAGACAATGCAAAGAATGCTGCACATGGATCAGACTCTTCAGAATCAGCCAAAAAAGAAATTGACTTTTTCTTTGGTCGTCCAACATTTAGTGGAAAAAATACTGCTACTTTTTCAGACTGCACTCTCTGCATAATTAAACCCCACACCATCATTGAAGGTCTCACTGGCAAAATCATCTCGGCCATCACAAGCAAGGGATTTGAAATATCTGCAGTTCAAATGTTTCACCTGGAAAGAGCAAATGCTGAGGAATTTCACGATGTGTACAAAGGTGTTGTAAATGAATACAAGAGCATGGTTGAAGAACTGTGTTGTGGTCCATGCCTGGCCATGGAGATAAGAGCTCCTGATGCCCCTGTCACATTCAGAGAGTTTGTTGGCCCTTCTGACCCTGAAATCGCTCGCCACCTACGACCAGGAACATTACGTGCAATGTTTGGCAAAGATAAAATTAAAAACGCTGTACATTGCAGTGATTTACCTGAAGATGGTCTGATAGAGGTGCAGTATTTTTTCAAGCTTTTGTTAAATGTTAACATGAGGGTTGACAGTTGGTGGATTAAAGGAATTCTGTTCCTGTGGTTGTGCCATTTTGGCTGTTGTTCATCCGATGATGACAATCAAGTTTGTGTGCAAACTCAATTTAACAGTACAGAAAATACTGACTGTTATGATTATGGCTGGGCAAGTTTTGGTAACCTCATTCGTTCCCCATACATAAAGGGCGTTGTGGTGCTGGCTGATCCCCCGACAGCATGTGACTCAGTGAAGCCCCAAAGTAGTTATAATCAATCTGGTTACTCTGGAAATTGGTTTCTTCTCATTGATGTGGGCAAGTGTGAGTTTGATACTAAGGGGGCCATGGCTACTAAAGGAGGATTTGATGCCGCTATCATTAGGAGCCTGGAGAGTGATGTTGTTCAGCCCATTGGAGGAGGCTCAGATAATAGAAAAGTTAAAGTGCCAGTTGTTTATGTAGGGAAGGACACTGGTGAAGTCCTAGAAGATAACGATTTTACAAAACAACAGAGCAGTAGAATCCTTCTTACCCCACAAGAATTTCCTCCAATATGGGATTATGAGTTCTACATGATTCCATTTGCAATCATTGTAGGAATCTGTTTTATTTTGATGGCTATGTTTATGATTAGTCGTTACTACAGACACTACCTAGAACAGCGACGTAACAGGCTGTCGCCAACAAATCTGAGGAAGATTCCAACAAAAAAGTTTAAAAAAGGTGATGATTACTATGATGTGTGTGCTATTTGTTTGGAGGAGTACAAAGATGGAGAAAGGCTGCGAATTCTTCCCTGTGAGCACGCCTACCATTGCAAGTGTGTAGATCCGTGGCTGACTGAAGGGAAGCGAACATGTCCAGTGTGCAAACGACCTGTATCAAATGACAGCAAAAGAAGAAACAGATCTCGGAGAACTGACGTGGAGGCAGCAGGGGAATCAACAAATGAAGCTGATGAAACCACTCCTCTTATAGCATCTACTTCTCAATCAGCCGGCAGCTCTAACTCCATGACGGTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QXL7	Nucleoside diphosphate kinase homolog 7 OS=Rattus norvegicus OX=10116 GN=Nme7 PE=1 SV=2
Q9Y5B8	Nucleoside diphosphate kinase homolog 7 OS=Homo sapiens OX=9606 GN=NME7 PE=1 SV=1
Q9QXL8	Nucleoside diphosphate kinase homolog 7 OS=Mus musculus OX=10090 GN=Nme7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004725 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02225 all species →	PA	PA domain	Family	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan
PF00334 all species →	NDK	Nucleoside diphosphate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036850 all species →	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR001564 all species →	Family	Nucleoside diphosphate kinase	Interproscan
IPR006602 all species →	Domain	DM10 domain	Interproscan
IPR034907 all species →	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR003137 all species →	Domain	PA domain	Interproscan
IPR037993 all species →	Domain	NDPK7, second NDPk domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43109 all species →	NUCLEOSIDE DIPHOSPHATE KINASE 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0006183 all species →	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241 all species →	Biological Process	CTP biosynthetic process	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.87.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.