Gene detail

Detailed information of evm.model.Ap8.881 in Astrangia poculata

Genomic Location: Ap8:9553228...9569909
NR annotation: KAJ7369526.1, respiration factor rsf1 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.881

atggcgtctactcctgcgactagcgaagtggatcccgaagaagatgccggcggaatgagaattgacgctcataagacgggccaagcagccgagaatccagactttgcaatcatttggtcatttctggagaactttagacaccttttgcactttcccgatctgtccctggacgatttagaagatgggttcaacagccattcgccggaaaatggtaatgttgagatgataacagagtgtttcaagaagctactaagacgactaggaatctcagtaaacccagaaaaatgggagaagtcattgcttaaggttgctaaagaacatagccttgattgttcttgggatttggaacaatttggttatgaggagcttaagatctcatccaaattggaacttttcaagctgctgttagaatgccaatttgatcagaatgataaactcaagagctctataaataaaggctttgatgctgacgaactgcgcatgcagcctattggacgagatgtagatgggctcatttactggtatcatgaggacgagtcaaatggtgtacggctatataccaccgaggaagacgaagtaaattgtgaatcatggagattgttagctagggagactgatgaactggtggaagttgttgaatttttggagaccaagtcagttgtgaaccccaaggaaatagcgcttgctaaacgggaggagatgaaaaagaagggagagatcaagagccctggcaagaagaaaggaagaaaaagcaaaaagaaggcagcagaagaagactatgatgacgacaacccatgtgcaagatgtttttcaaatgtcagaccagattcaattcttctgtgtgacaagtgtgatgccgcttaccacacagcttgccttcgtccccctctgctcactgtgccacaaggagactggttctgcccattctgtcaacagttggtgttgctggatattttaaaagagaagaaaacacgactagcagctcgaatgaaactcaggcaaagacaagctaaaaggctgggttttgctggtattgacttggacaacatcttgcagaaaacatcagacgatgaagaagatcaaggaataagacgatctggtcgctcaaggaaaaacgtcgactacacgttcaaagaattcgaagacgacatcacatcggccgtggagcacgacaagaagagattcaaaggggaggaggttaacggagaggaacaacatttattgtactccaaacctgcttacgagacaggcaacttcctcgcgacaagacaacgaaacacccgcagatcccgtagacttttggaccttgattacgaaagtgactcggagtcgcgggcgagtgggtacgagtacgaggcaaattctgatgatgatagtcagcggagttccacggtcagcggattctctcgcctccgaaggacacgaagggttatcgatgaagacgacgacgaaaacggcgacgatggcaaaaacggggagaaatcgattgttactgaaggtgagaaagaagaggaggagaaagagaaggatcattcagacgaaaagcagcccgaaagttcagaattaccagaacaacaagaaaacgacaaagaaacggcaaagaaatccgacaacgaaaaagcgaaaacgagcggagacggcaaagacgcaaaccagaaagttatgagctcagcgagtgaaacagaagccgttacgactaatatttcaccctcgcaacctcaaaacacaactctcccaggtaacaagatccagccgcactctcggatagcttctgtggcgccagtagctcgcagtcagccagttgctgacatgaacaactacagaaaccccgccaactaccccccagagggcgtttttccaaatcctcccaactttgacatgttcaagccacaatttactgcaaagcaggttccaaacttcgttggaccaaattttggagccgttaatttagctacgccaaacattgcaggaaataactttacgagcaacaattcgggaagtgttaacatttcgccgagtaatgtaccaggaattactcaaggaggagcaacttttcccggggttcaaggagttggaactccaaatacgaggacaaatttcgggggacccggtctttcgggacctaatccggtagcgccaagttttccaggttccactcctaattttccaggtggcaatctaggagggcagaatatctctggtacaaattttagtgggtcttttgtcggagaactaaacaacttaggaactggcgtggggaccaattttggaggaaccaatttcggtggaggtaacgcaactggggctggcgtaggaagttttggtgtcatgaagagcccaacgcaaaatgtacccggctctttttggggagcccagaatgactttaacaacatgtgtaactatcaaggatttccttcttcaacgggaggggcaccagctcccgtcactagtcccacaaacaaccagactttaccgcccccaccatacccccctgcggcaagatttgcgggtgccaaccagtatggaaacttcaaccaacagtttcaaggaaattctaacatgcagaataattacgttgcaccacaacagagcagctatttcccagctacgcctcaacagccgccgccaccttatccttcagggaattcactaaatgcgaacttctacacgaacaatacacaagaaggtggccttgcgggtaaccagtggacttatcccgagggatacgggtactatcccggacaaggaaatgccgctggacagaatttttag

Transcript

evm.model.Ap8.881

ATGGCGTCTACTCCTGCGACTAGCGAAGTGGATCCCGAAGAAGATGCCGGCGGAATGAGAATTGACGCTCATAAGACGGGCCAAGCAGCCGAGAATCCAGACTTTGCAATCATTTGGTCATTTCTGGAGAACTTTAGACACCTTTTGCACTTTCCCGATCTGTCCCTGGACGATTTAGAAGATGGGTTCAACAGCCATTCGCCGGAAAATGGTAATGTTGAGATGATAACAGAGTGTTTCAAGAAGCTACTAAGACGACTAGGAATCTCAGTAAACCCAGAAAAATGGGAGAAGTCATTGCTTAAGGTTGCTAAAGAACATAGCCTTGATTGTTCTTGGGATTTGGAACAATTTGGTTATGAGGAGCTTAAGATCTCATCCAAATTGGAACTTTTCAAGCTGCTGTTAGAATGCCAATTTGATCAGAATGATAAACTCAAGAGCTCTATAAATAAAGGCTTTGATGCTGACGAACTGCGCATGCAGCCTATTGGACGAGATGTAGATGGGCTCATTTACTGGTATCATGAGGACGAGTCAAATGGTGTACGGCTATATACCACCGAGGAAGACGAAGTAAATTGTGAATCATGGAGATTGTTAGCTAGGGAGACTGATGAACTGGTGGAAGTTGTTGAATTTTTGGAGACCAAGTCAGTTGTGAACCCCAAGGAAATAGCGCTTGCTAAACGGGAGGAGATGAAAAAGAAGGGAGAGATCAAGAGCCCTGGCAAGAAGAAAGGAAGAAAAAGCAAAAAGAAGGCAGCAGAAGAAGACTATGATGACGACAACCCATGTGCAAGATGTTTTTCAAATGTCAGACCAGATTCAATTCTTCTGTGTGACAAGTGTGATGCCGCTTACCACACAGCTTGCCTTCGTCCCCCTCTGCTCACTGTGCCACAAGGAGACTGGTTCTGCCCATTCTGTCAACAGTTGGTGTTGCTGGATATTTTAAAAGAGAAGAAAACACGACTAGCAGCTCGAATGAAACTCAGGCAAAGACAAGCTAAAAGGCTGGGTTTTGCTGGTATTGACTTGGACAACATCTTGCAGAAAACATCAGACGATGAAGAAGATCAAGGAATAAGACGATCTGGTCGCTCAAGGAAAAACGTCGACTACACGTTCAAAGAATTCGAAGACGACATCACATCGGCCGTGGAGCACGACAAGAAGAGATTCAAAGGGGAGGAGGTTAACGGAGAGGAACAACATTTATTGTACTCCAAACCTGCTTACGAGACAGGCAACTTCCTCGCGACAAGACAACGAAACACCCGCAGATCCCGTAGACTTTTGGACCTTGATTACGAAAGTGACTCGGAGTCGCGGGCGAGTGGGTACGAGTACGAGGCAAATTCTGATGATGATAGTCAGCGGAGTTCCACGGTCAGCGGATTCTCTCGCCTCCGAAGGACACGAAGGGTTATCGATGAAGACGACGACGAAAACGGCGACGATGGCAAAAACGGGGAGAAATCGATTGTTACTGAAGGTGAGAAAGAAGAGGAGGAGAAAGAGAAGGATCATTCAGACGAAAAGCAGCCCGAAAGTTCAGAATTACCAGAACAACAAGAAAACGACAAAGAAACGGCAAAGAAATCCGACAACGAAAAAGCGAAAACGAGCGGAGACGGCAAAGACGCAAACCAGAAAGTTATGAGCTCAGCGAGTGAAACAGAAGCCGTTACGACTAATATTTCACCCTCGCAACCTCAAAACACAACTCTCCCAGGTAACAAGATCCAGCCGCACTCTCGGATAGCTTCTGTGGCGCCAGTAGCTCGCAGTCAGCCAGTTGCTGACATGAACAACTACAGAAACCCCGCCAACTACCCCCCAGAGGGCGTTTTTCCAAATCCTCCCAACTTTGACATGTTCAAGCCACAATTTACTGCAAAGCAGGTTCCAAACTTCGTTGGACCAAATTTTGGAGCCGTTAATTTAGCTACGCCAAACATTGCAGGAAATAACTTTACGAGCAACAATTCGGGAAGTGTTAACATTTCGCCGAGTAATGTACCAGGAATTACTCAAGGAGGAGCAACTTTTCCCGGGGTTCAAGGAGTTGGAACTCCAAATACGAGGACAAATTTCGGGGGACCCGGTCTTTCGGGACCTAATCCGGTAGCGCCAAGTTTTCCAGGTTCCACTCCTAATTTTCCAGGTGGCAATCTAGGAGGGCAGAATATCTCTGGTACAAATTTTAGTGGGTCTTTTGTCGGAGAACTAAACAACTTAGGAACTGGCGTGGGGACCAATTTTGGAGGAACCAATTTCGGTGGAGGTAACGCAACTGGGGCTGGCGTAGGAAGTTTTGGTGTCATGAAGAGCCCAACGCAAAATGTACCCGGCTCTTTTTGGGGAGCCCAGAATGACTTTAACAACATGTGTAACTATCAAGGATTTCCTTCTTCAACGGGAGGGGCACCAGCTCCCGTCACTAGTCCCACAAACAACCAGACTTTACCGCCCCCACCATACCCCCCTGCGGCAAGATTTGCGGGTGCCAACCAGTATGGAAACTTCAACCAACAGTTTCAAGGAAATTCTAACATGCAGAATAATTACGTTGCACCACAACAGAGCAGCTATTTCCCAGCTACGCCTCAACAGCCGCCGCCACCTTATCCTTCAGGGAATTCACTAAATGCGAACTTCTACACGAACAATACACAAGAAGGTGGCCTTGCGGGTAACCAGTGGACTTATCCCGAGGGATACGGGTACTATCCCGGACAAGGAAATGCCGCTGGACAGAATTTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96T23	Remodeling and spacing factor 1 OS=Homo sapiens OX=9606 GN=RSF1 PE=1 SV=2
Q9FNE9	Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana OX=3702 GN=ATXR6 PE=1 SV=1
Q9SGH2	Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=MBD9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006017 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF02791 all species →	DDT	DDT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR028938 all species →	Family	Remodeling and spacing factor 1-like	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14296 all species →	REMODELING AND SPACING FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0031213 all species →	Cellular Component	RSF complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.881.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.