Detailed information of evm.model.Ap8.883 in Astrangia poculata

Genomic Location: Ap8:9589914...9591071
NR annotation: XP_020601997.1, E3 ubiquitin-protein ligase MSL2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009933 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16682
all species →		MSL2-CXCCXC domain of E3 ubiquitin-protein ligase MSL2DomainInterproscan
PF16685
all species →		zf-RING_10zinc RING finger of MSL2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032049
all species →		DomainE3 ubiquitin-protein ligase Msl2, CXC domainInterproscan
IPR032043
all species →		DomainE3 ubiquitin-protein ligase Msl2, zinc RING fingerInterproscan
IPR033467
all species →		DomainTesmin/TSO1-like CXC domainInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR037922
all species →		FamilyE3 ubiquitin-protein ligase MSL2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16048
all species →		MSL2-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0043984
all species →		Biological Processobsolete histone H4-K16 acetylationInterproscan
GO:0072487
all species →		Cellular ComponentMSL complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13164MSL2; male-specific lethal 2-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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