Gene detail

Detailed information of evm.model.Ap8.884 in Astrangia poculata

Genomic Location: Ap8:9591516...9610794
NR annotation: XP_020601996.1, propionyl-CoA carboxylase beta chain, mitochondrial-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P79384	Propionyl-CoA carboxylase beta chain, mitochondrial OS=Sus scrofa OX=9823 GN=PCCB PE=1 SV=1
Q99MN9	Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus OX=10090 GN=Pccb PE=1 SV=2
P05166	Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens OX=9606 GN=PCCB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004376 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01039 all species →	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011762 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, N-terminal	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR034733 all species →	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR051047 all species →	Family	Acyl-CoA Carboxylase Beta Subunit	Interproscan
IPR011763 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43842 all species →	PROPIONYL-COA CARBOXYLASE BETA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004658 all species →	Molecular Function	propionyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01966	PCCB, pccB; propionyl-CoA carboxylase beta subunit	EC:6.4.1.3 EC:2.1.3.15	Valine, leucine and isoleucine degradation	ko00280	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.