Gene detail

Detailed information of evm.model.Ap8.907 in Astrangia poculata

Genomic Location: Ap8:9851357...9871128
NR annotation: KAJ7353930.1, Mediator of RNA polymerase II transcription subunit 12-like protein [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap8.907

atggcggcccctcgccctctgaaaagaccacgtttgggtcagccagacgtatatccacaagacagtaaacaaagagaggatgagctcaccgaggaaaacgtcaaaaaaggcttcagctatcagccgcttcccttcagttcgggaacaattgagtatggatcggcgaaagatatcatgtcgaatgtgccactgtcgaagtttgctcaaaacttcaatgccattttgctggaaaaacagaaacaaaacacctttacgtcacaagatggaaacaagaggaaaacacagtccgttaaagataattttatgccagtgcatataactgctcgtaatcgtgcattcatatcgtcatggtttcaggatcttgctgggaacaaaccccttacagttttagccaagaaagtgactacactgtatgacctggagaagatagtggaaggggacaggggcgtgggagaccaggacaaaaagggtgggaagcaggagaagagagggcgggaagtgggattcctaaggaggcgggaactgggagaaaacaaggcaaataaaggatcaaagaagctcagtagaccatatattcatatttttggtattggacaggaactagcttgcaatggagaccaatgcgggcaaggagtgagagactgggaaccagttgggaagaacaatataacccaaatatggggtttacttacacccaaatatggtcaaaaaaaagtcccttacgcaaaacctaagattttctctgcctatacactcatacgcacacggctctatgattctgccgcctcgacagcctcgcctcttggctcggctgtctcgttggcaacaagcgaaaataatgaacgacgtttcggtagccaacagtgcgttgtttataactatgtatgtgatctgtgcgatgcagaatacgtcggttacaccagccgtcacctttataagcgcattgaggaacaccgattttcagccattggaaaacaccttcaaaatgaacaccgaattgataaagttggcgacctgaccagggttctccctagttttcagcacagcagaaaaactactttacatcaaagtgaccgtgatatggtggcatatcaggtgccaattttcaataagaaagaggaaatttttagcagtctgtgtgattactccattccaatgctgcgagctgcatggtttataaaaatatcatcagcttacaacacaggcgtcaatgagtccaaaggcaagaaaagaattatggcagaccctgcatcagactggacccatgctctaacaaaattcttgaaggaccagttaaacaagattgcagatttctatcaaagccactttggtgggataacttccacccagcaccaacaaagaatgacacctgaaatggaacaagcattgaaacagtggaactacactgtacgattatcacactggctgtatgaggagagccttcttgatagacaagactttcttaactggctgttggatttgttggataaaagcaagaatgctgatgacttgctgctaaaattcctaatccctcttctgcttaggtatgttgaccaggtagtcatgtctcaaacccttgccagaagcctcgcccaagtttgttccaggaagctgtcaacattatattctgcagctgagcagatgcaatctgaacagcaaaatcaaggagcaagcagcagttctactaggacaagcagttcatctgtgccaagccctgtaccatcaattacttcagaaagctcaactttgacagccatcagtgctcagtcacttcctgtcctctcgcagtacaagacatgccctcagcaccacgcccttgttctagcactgagttccgttctccaaactatcgccatcagttgtcctggagccctcatctggaactccattccctgtggaaacagctccagtaacacgacaagcagtggaagtaactccagtgggacaaatgccgatgctggagccagtaaacctgcggttttgggatccccattggacaggctgcctatcgcaccatctgcaatgcctcttccatcccctggaaatgcacagggatccctaaattctgagctgttgtctgttctgcttgcaagtgaggaggagatcaaaaccagaagtaaagctgttgagtctcactggtcccctgataaataccaagacaaatcttcagccgtctctatttcagttttagctgtgaagagggtgctcaacactttggagatccttgaccgctacaacttcaaccgagcagactcaacaagttccattgattcactttacagcaagatttttgctgattcaacaaaaactggaggagaggcatctgctactgatgaggcaattgctcttctgctgttcgagtgggcagtcagtaaatatcgtgtgggcaaattccgggcattagctgttgctaagatcctgcaaagaaggcaagcagaaatccttgaagagagaaaagttctcatgatcaggagaagaaggcacatcatcaaatgtcgcttctacaagcacagtgccacctttccaaaagatggtggttaccaacacaacaaggcacatccaagttttgcacagctaactcttctgtttggggaactcatcagaaatgaagttttctcccacaatgcatacatgtgcagcctcatatcaagaggagatcttcagcccacccctcctgtttctatcccctctcccccaaggcctgtaatgactagcatggaacacccccctgaagctgaacctatgggcattgaagaatgtgtacaggagggggatgcacaggggggcatagacattcacagtttggcctgttgcgatgaattctccagttctccatcaggctcttcagcagctcctgatggctctgctgctatctgcgcccagccatgcctaaaaggaggcggccccgtaatgatcagtggaataattaattcctttttgttttggtactatttgcctggattaaagacatgtcttgagaagattttgttaatgtag

Transcript

evm.model.Ap8.907

ATGGCGGCCCCTCGCCCTCTGAAAAGACCACGTTTGGGTCAGCCAGACGTATATCCACAAGACAGTAAACAAAGAGAGGATGAGCTCACCGAGGAAAACGTCAAAAAAGGCTTCAGCTATCAGCCGCTTCCCTTCAGTTCGGGAACAATTGAGTATGGATCGGCGAAAGATATCATGTCGAATGTGCCACTGTCGAAGTTTGCTCAAAACTTCAATGCCATTTTGCTGGAAAAACAGAAACAAAACACCTTTACGTCACAAGATGGAAACAAGAGGAAAACACAGTCCGTTAAAGATAATTTTATGCCAGTGCATATAACTGCTCGTAATCGTGCATTCATATCGTCATGGTTTCAGGATCTTGCTGGGAACAAACCCCTTACAGTTTTAGCCAAGAAAGTGACTACACTGTATGACCTGGAGAAGATAGTGGAAGGGGACAGGGGCGTGGGAGACCAGGACAAAAAGGGTGGGAAGCAGGAGAAGAGAGGGCGGGAAGTGGGATTCCTAAGGAGGCGGGAACTGGGAGAAAACAAGGCAAATAAAGGATCAAAGAAGCTCAGTAGACCATATATTCATATTTTTGGTATTGGACAGGAACTAGCTTGCAATGGAGACCAATGCGGGCAAGGAGTGAGAGACTGGGAACCAGTTGGGAAGAACAATATAACCCAAATATGGGGTTTACTTACACCCAAATATGGTCAAAAAAAAGTCCCTTACGCAAAACCTAAGATTTTCTCTGCCTATACACTCATACGCACACGGCTCTATGATTCTGCCGCCTCGACAGCCTCGCCTCTTGGCTCGGCTGTCTCGTTGGCAACAAGCGAAAATAATGAACGACGTTTCGGTAGCCAACAGTGCGTTGTTTATAACTATGTATGTGATCTGTGCGATGCAGAATACGTCGGTTACACCAGCCGTCACCTTTATAAGCGCATTGAGGAACACCGATTTTCAGCCATTGGAAAACACCTTCAAAATGAACACCGAATTGATAAAGTTGGCGACCTGACCAGGGTTCTCCCTAGTTTTCAGCACAGCAGAAAAACTACTTTACATCAAAGTGACCGTGATATGGTGGCATATCAGGTGCCAATTTTCAATAAGAAAGAGGAAATTTTTAGCAGTCTGTGTGATTACTCCATTCCAATGCTGCGAGCTGCATGGTTTATAAAAATATCATCAGCTTACAACACAGGCGTCAATGAGTCCAAAGGCAAGAAAAGAATTATGGCAGACCCTGCATCAGACTGGACCCATGCTCTAACAAAATTCTTGAAGGACCAGTTAAACAAGATTGCAGATTTCTATCAAAGCCACTTTGGTGGGATAACTTCCACCCAGCACCAACAAAGAATGACACCTGAAATGGAACAAGCATTGAAACAGTGGAACTACACTGTACGATTATCACACTGGCTGTATGAGGAGAGCCTTCTTGATAGACAAGACTTTCTTAACTGGCTGTTGGATTTGTTGGATAAAAGCAAGAATGCTGATGACTTGCTGCTAAAATTCCTAATCCCTCTTCTGCTTAGGTATGTTGACCAGGTAGTCATGTCTCAAACCCTTGCCAGAAGCCTCGCCCAAGTTTGTTCCAGGAAGCTGTCAACATTATATTCTGCAGCTGAGCAGATGCAATCTGAACAGCAAAATCAAGGAGCAAGCAGCAGTTCTACTAGGACAAGCAGTTCATCTGTGCCAAGCCCTGTACCATCAATTACTTCAGAAAGCTCAACTTTGACAGCCATCAGTGCTCAGTCACTTCCTGTCCTCTCGCAGTACAAGACATGCCCTCAGCACCACGCCCTTGTTCTAGCACTGAGTTCCGTTCTCCAAACTATCGCCATCAGTTGTCCTGGAGCCCTCATCTGGAACTCCATTCCCTGTGGAAACAGCTCCAGTAACACGACAAGCAGTGGAAGTAACTCCAGTGGGACAAATGCCGATGCTGGAGCCAGTAAACCTGCGGTTTTGGGATCCCCATTGGACAGGCTGCCTATCGCACCATCTGCAATGCCTCTTCCATCCCCTGGAAATGCACAGGGATCCCTAAATTCTGAGCTGTTGTCTGTTCTGCTTGCAAGTGAGGAGGAGATCAAAACCAGAAGTAAAGCTGTTGAGTCTCACTGGTCCCCTGATAAATACCAAGACAAATCTTCAGCCGTCTCTATTTCAGTTTTAGCTGTGAAGAGGGTGCTCAACACTTTGGAGATCCTTGACCGCTACAACTTCAACCGAGCAGACTCAACAAGTTCCATTGATTCACTTTACAGCAAGATTTTTGCTGATTCAACAAAAACTGGAGGAGAGGCATCTGCTACTGATGAGGCAATTGCTCTTCTGCTGTTCGAGTGGGCAGTCAGTAAATATCGTGTGGGCAAATTCCGGGCATTAGCTGTTGCTAAGATCCTGCAAAGAAGGCAAGCAGAAATCCTTGAAGAGAGAAAAGTTCTCATGATCAGGAGAAGAAGGCACATCATCAAATGTCGCTTCTACAAGCACAGTGCCACCTTTCCAAAAGATGGTGGTTACCAACACAACAAGGCACATCCAAGTTTTGCACAGCTAACTCTTCTGTTTGGGGAACTCATCAGAAATGAAGTTTTCTCCCACAATGCATACATGTGCAGCCTCATATCAAGAGGAGATCTTCAGCCCACCCCTCCTGTTTCTATCCCCTCTCCCCCAAGGCCTGTAATGACTAGCATGGAACACCCCCCTGAAGCTGAACCTATGGGCATTGAAGAATGTGTACAGGAGGGGGATGCACAGGGGGGCATAGACATTCACAGTTTGGCCTGTTGCGATGAATTCTCCAGTTCTCCATCAGGCTCTTCAGCAGCTCCTGATGGCTCTGCTGCTATCTGCGCCCAGCCATGCCTAAAAGGAGGCGGCCCCGTAATGATCAGTGGAATAATTAATTCCTTTTTGTTTTGGTACTATTTGCCTGGATTAAAGACATGTCTTGAGAAGATTTTGTTAATGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86YW9	Mediator of RNA polymerase II transcription subunit 12-like protein OS=Homo sapiens OX=9606 GN=MED12L PE=1 SV=2
Q8BQM9	Mediator of RNA polymerase II transcription subunit 12-like protein OS=Mus musculus OX=10090 GN=Med12l PE=1 SV=2
Q2QCI8	Mediator of RNA polymerase II transcription subunit 12 OS=Danio rerio OX=7955 GN=med12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12145 all species →	Med12-LCEWAV	Eukaryotic Mediator 12 subunit domain	Domain	Interproscan
PF09497 all species →	Med12	Transcription mediator complex subunit Med12	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021990 all species →	Domain	Mediator complex, subunit Med12, LCEWAV-domain	Interproscan
IPR019035 all species →	Domain	Mediator complex, subunit Med12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46567 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap8.907.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.