Gene detail

Detailed information of evm.model.Ap9.1000 in Astrangia poculata

Genomic Location: Ap9:10662203...10694997
NR annotation: CAH3155606.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1000

atgtatgcagcaaggacgtgtgcacgattgttaaagcagcatttgttgggttccggcaagctttcgtttcaaagatggcagcaaacggcggctttggtcgctcaggagccgtttttgaacggcagcagtagcaattatgtggaggaaatgtatttatcgtggaaagaagacccaaagagcgtacatcggtcgtgggatgcttatttccgccaagttcagaatggaatgccgccaggccaggcttaccagccgccacccattctaggacagtcagctggcatggtagcaacaacacagactgttccaactgccgtcaaccaatcaactataaacagcctagtgcaagatcacttggcagtttactcattgattcgttgttaccagatccgaggccataacaaagcacagttagaccctctcggcatcctacaggccgacttatcagactcctcccctgctgatctttctatggaatactggggacttggagagtctgaccttgacaaagtttttcaacttcctaacacaacttacattggcggcaacacagatgttctgactttgagagaaattctcagcaggctggagaattcatattgtggacacattgggctggattatatgttcattccagagaaatccaaatgtgactggataagaaagcgatttgagaccccaggaattatagcattggatgcagaggacaaaagaactttgttgaagaggctcattcgctcaactgggtttgaggcttttctcgccaagaagtggtcgtcagagaaacgttttggcatcgaaggttgcgaagttctgatcccggcaatgaagatgattattgacaagtcgagcgagcttggggtggaaagcatcatcatgggaatgccacacaggggaagactaaatgttttggccaatgtttgccgcaaatctctggagcagatttttactcagtttgaccccacgctagaagcttctgatgaaggatcaggagacgtgaaatatcatcttgggatgtcgcatgaacgcctcaacagagcaactaacaaaatcatgcgcttggctgttgtcgcaaatccctctcatttggaagctgtggatcctgtggttgaaggaaaaaccagatcagagcagttctacagaggggacactcaagggaaaaaggtgatgagtgtccttatccatggtgacgcggcattttctggacagggtgtggtttacgagacatttcatttgagtgcattgccacagtatacaacccacggcaccattcatattgttgttaacaaccagattggcttcacaactgatccaagagtcgctcgctcatctccttactgtactgatgttgccaaggttgtagatgcccctatattccatgtgaatgctgacgaccctgaagctgttatgcatgtctgtaaggttgcagcagaatggagagcagagtttggaaaagatgttgttattgatttggtatgctatcgccgccatggtcacaatgaaggtgacaatccaatgttcacccaacctgtcatgtacaagaatatttccaaaaagaatatcatttcggatttgtatgcaaagaaacttacacaggagggtgtggtcactgaggagtggattcaggaagagaaagctagctatgacaagatctgtgaagaagcttttgttgacgcaaagtctgaaaagcgaatgcttaacaaggactggcttgattcgccatggaaaggattcttccagaaaggctatacgccttctctgccagtgagaccaacaggagttcctcttgacactctcaagcaaattggaaatgtgtttagtactgcccctggtggagacttcaaagttcatggaggactgcggcgaatcctgaaagcacgtcatgacttgctggagaaaggttatattgactgggcaatgggcgaggctctggcatttggttctcttctcatggagggtgtacatgttaggctcagtggacaggatgtagaaagagggacattcagtcatcgtcatcacattcttcatcaccaagacaaagataaagtgacatactgtccattgaatgacctcagtgctgatcaagccatctacactgcctgcaatagctccttgtcagaatatgctgtgttaggttttgagttgggttttagtatgaccaatccatttgcacttgtctgttgggaggctcagtttggagacttcaacaatactgcgcagtgtattattgaccagttcataagcagtggccaagacaagtgggtcagacagagtggtctcactttgatgttaccacatggatatgaaggaatgggacctgaacattccagcgccagaccagagaggttcttacagatgagcaatgatagccctgatgtttttccaacagttgatgagctctttgaagtgaaccagctgtattctaccaattggcaggttgttaactgcagcacacctgcaaacgtcttccacatattccgacgtcaaattgcaatgaacttccgcaagcctctcatccttttcacacctaaaagccttcttcgactggaagctgccaggtctcatcttgatgaaatgacggaaggtacatcatttaggcgagtgattcctgatgctggtcctgcatcaaataatccagaaaaagttcgcaaactccttctttgtactggcaaagtgtactatgaactggcaaaggaacgtaacaagagaggacttgaagaagatatcgctatcagtcgtgtcgagcaggtaactcagtataatctagccttgctttaa

Transcript

evm.model.Ap9.1000

ATGTATGCAGCAAGGACGTGTGCACGATTGTTAAAGCAGCATTTGTTGGGTTCCGGCAAGCTTTCGTTTCAAAGATGGCAGCAAACGGCGGCTTTGGTCGCTCAGGAGCCGTTTTTGAACGGCAGCAGTAGCAATTATGTGGAGGAAATGTATTTATCGTGGAAAGAAGACCCAAAGAGCGTACATCGGTCGTGGGATGCTTATTTCCGCCAAGTTCAGAATGGAATGCCGCCAGGCCAGGCTTACCAGCCGCCACCCATTCTAGGACAGTCAGCTGGCATGGTAGCAACAACACAGACTGTTCCAACTGCCGTCAACCAATCAACTATAAACAGCCTAGTGCAAGATCACTTGGCAGTTTACTCATTGATTCGTTGTTACCAGATCCGAGGCCATAACAAAGCACAGTTAGACCCTCTCGGCATCCTACAGGCCGACTTATCAGACTCCTCCCCTGCTGATCTTTCTATGGAATACTGGGGACTTGGAGAGTCTGACCTTGACAAAGTTTTTCAACTTCCTAACACAACTTACATTGGCGGCAACACAGATGTTCTGACTTTGAGAGAAATTCTCAGCAGGCTGGAGAATTCATATTGTGGACACATTGGGCTGGATTATATGTTCATTCCAGAGAAATCCAAATGTGACTGGATAAGAAAGCGATTTGAGACCCCAGGAATTATAGCATTGGATGCAGAGGACAAAAGAACTTTGTTGAAGAGGCTCATTCGCTCAACTGGGTTTGAGGCTTTTCTCGCCAAGAAGTGGTCGTCAGAGAAACGTTTTGGCATCGAAGGTTGCGAAGTTCTGATCCCGGCAATGAAGATGATTATTGACAAGTCGAGCGAGCTTGGGGTGGAAAGCATCATCATGGGAATGCCACACAGGGGAAGACTAAATGTTTTGGCCAATGTTTGCCGCAAATCTCTGGAGCAGATTTTTACTCAGTTTGACCCCACGCTAGAAGCTTCTGATGAAGGATCAGGAGACGTGAAATATCATCTTGGGATGTCGCATGAACGCCTCAACAGAGCAACTAACAAAATCATGCGCTTGGCTGTTGTCGCAAATCCCTCTCATTTGGAAGCTGTGGATCCTGTGGTTGAAGGAAAAACCAGATCAGAGCAGTTCTACAGAGGGGACACTCAAGGGAAAAAGGTGATGAGTGTCCTTATCCATGGTGACGCGGCATTTTCTGGACAGGGTGTGGTTTACGAGACATTTCATTTGAGTGCATTGCCACAGTATACAACCCACGGCACCATTCATATTGTTGTTAACAACCAGATTGGCTTCACAACTGATCCAAGAGTCGCTCGCTCATCTCCTTACTGTACTGATGTTGCCAAGGTTGTAGATGCCCCTATATTCCATGTGAATGCTGACGACCCTGAAGCTGTTATGCATGTCTGTAAGGTTGCAGCAGAATGGAGAGCAGAGTTTGGAAAAGATGTTGTTATTGATTTGGTATGCTATCGCCGCCATGGTCACAATGAAGGTGACAATCCAATGTTCACCCAACCTGTCATGTACAAGAATATTTCCAAAAAGAATATCATTTCGGATTTGTATGCAAAGAAACTTACACAGGAGGGTGTGGTCACTGAGGAGTGGATTCAGGAAGAGAAAGCTAGCTATGACAAGATCTGTGAAGAAGCTTTTGTTGACGCAAAGTCTGAAAAGCGAATGCTTAACAAGGACTGGCTTGATTCGCCATGGAAAGGATTCTTCCAGAAAGGCTATACGCCTTCTCTGCCAGTGAGACCAACAGGAGTTCCTCTTGACACTCTCAAGCAAATTGGAAATGTGTTTAGTACTGCCCCTGGTGGAGACTTCAAAGTTCATGGAGGACTGCGGCGAATCCTGAAAGCACGTCATGACTTGCTGGAGAAAGGTTATATTGACTGGGCAATGGGCGAGGCTCTGGCATTTGGTTCTCTTCTCATGGAGGGTGTACATGTTAGGCTCAGTGGACAGGATGTAGAAAGAGGGACATTCAGTCATCGTCATCACATTCTTCATCACCAAGACAAAGATAAAGTGACATACTGTCCATTGAATGACCTCAGTGCTGATCAAGCCATCTACACTGCCTGCAATAGCTCCTTGTCAGAATATGCTGTGTTAGGTTTTGAGTTGGGTTTTAGTATGACCAATCCATTTGCACTTGTCTGTTGGGAGGCTCAGTTTGGAGACTTCAACAATACTGCGCAGTGTATTATTGACCAGTTCATAAGCAGTGGCCAAGACAAGTGGGTCAGACAGAGTGGTCTCACTTTGATGTTACCACATGGATATGAAGGAATGGGACCTGAACATTCCAGCGCCAGACCAGAGAGGTTCTTACAGATGAGCAATGATAGCCCTGATGTTTTTCCAACAGTTGATGAGCTCTTTGAAGTGAACCAGCTGTATTCTACCAATTGGCAGGTTGTTAACTGCAGCACACCTGCAAACGTCTTCCACATATTCCGACGTCAAATTGCAATGAACTTCCGCAAGCCTCTCATCCTTTTCACACCTAAAAGCCTTCTTCGACTGGAAGCTGCCAGGTCTCATCTTGATGAAATGACGGAAGGTACATCATTTAGGCGAGTGATTCCTGATGCTGGTCCTGCATCAAATAATCCAGAAAAAGTTCGCAAACTCCTTCTTTGTACTGGCAAAGTGTACTATGAACTGGCAAAGGAACGTAACAAGAGAGGACTTGAAGAAGATATCGCTATCAGTCGTGTCGAGCAGGTAACTCAGTATAATCTAGCCTTGCTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P6Z8	2-oxoglutarate dehydrogenase complex component E1 OS=Xenopus laevis OX=8355 GN=ogdh PE=2 SV=1
Q148N0	2-oxoglutarate dehydrogenase complex component E1 OS=Bos taurus OX=9913 GN=OGDH PE=1 SV=1
Q02218	2-oxoglutarate dehydrogenase complex component E1 OS=Homo sapiens OX=9606 GN=OGDH PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00676 all species →	E1_dh	Dehydrogenase E1 component	Family	Interproscan
PF02779 all species →	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF16078 all species →	2-oxogl_dehyd_N	2-oxoglutarate dehydrogenase N-terminus	Family	Interproscan
PF16870 all species →	OxoGdeHyase_C	2-oxoglutarate dehydrogenase C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR001017 all species →	Domain	Dehydrogenase, E1 component	Interproscan
IPR005475 all species →	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR011603 all species →	Family	2-oxoglutarate dehydrogenase E1 component	Interproscan
IPR032106 all species →	Domain	2-oxoglutarate dehydrogenase E1 component, N-terminal domain	Interproscan
IPR031717 all species →	Domain	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal	Interproscan
IPR042179 all species →	Homologous_superfamily	Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23152 all species →	2-OXOGLUTARATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016624 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0004591 all species →	Molecular Function	oxoglutarate dehydrogenase (succinyl-transferring) activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0045252 all species →	Cellular Component	oxoglutarate dehydrogenase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00164	OGDH, sucA; 2-oxoglutarate dehydrogenase E1 component	EC:1.2.4.2	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.