Gene detail

Detailed information of evm.model.Ap9.105 in Astrangia poculata

Genomic Location: Ap9:932603...947494
NR annotation: XP_022786281.1, exostosin-1a-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.105

atgaatgcaaagaagaggtattctttgatatttttgatcagtttgctgtgctgcagtgcattcattgtatacagaaaatcgacccgtttgtggcgtcggtcaacaaggacaagttttcgacccaacggcggactccagcttcaacagcaaaggctatgcttcttagatataaaagatgaatatattctgcgagatcatgccggttttcggcatgaacgtgcgacagtgccgaaagaaaaatgtactatggaaacatgttttgataggacgaagtgtctgaatgactttaaagtttatgtttatccaattcaaactggcgagaagatttctcctttgttcggtaaattgttaaaggtactgagggaaagtagattttatacagacgacccgaaaaaggcttgtttatttataccatccgtcgatactctggaccgcgataatctaagcgaggattatgtgcacgatttgcctcccaaggtctcgtccttgcctcattggaatggtggaactaaccatgtaatatttaacctcttctctggaacttggcctgattattctgaagatttacgcttcgatactggcaaagcgattttagcgaaagcatcgctctcaacggatttatttagacctggttttgacataagttttcctctgtttctgaaaagtcatccacagaaaggcaacgctgtggatgctccgtcgagttgtgcagtatttccactaaataggaaatataaacttgccttcaaagggaaacgttatctaaatggtataggaagcgagtctaggaactcattttaccatattcacaacggaaacgacattgtgcttttaacaacttgcaaacatggaaagaattggagaaaaatcatggatgaaagatgcgaaaaggacaatgaggaatatgacaagtatgactatgacgagcttttaaaaaatgcaacattttgtttggctcctcgtggaaggcgcctgggatcgtatcgattcttggagtccctccaggctggctgtattccagtgttactaagcaacggctgggagctcccattttccgaggtgattgattggagcaaggctctgattcagggcgaagaacgcctcctgactgaaatcccatctgttgtgagatcctacagtaagaaacaaatcctcgccatgaagcaacaagctctgtttctttacgaggcatatttctcatctgtagagaagatcttgcttaccacattagagatgattcgttcacgattatttccaaacaaagctgtcagtagaccaatgtggaacacgtttcctggagctctagtgactaggcctcaatattccatggatcctaaggactttcctttttataacatcaagctggaaattgaagacgataaattcactgcagtcattcacaccaccacaactgttgtcagggaatcatcagctctttccagattaatcaagaatgttgggcaatcaaagtttatttctaagattgtagtattatggacatctgatgctcctatcgctcacaagaagagatggccacaaataaatgctccattggtcattgtgagaccagaaactaagacaggaaacagtcgatttgtgcccaggacagtgatagaaacaaatgccattttatccttggatgaggatatcaaacttaattctgatgagattgattttgcgttttctacatggagacagtttcctgaccgcattgtaggttttccagccagagaccactactgggacagtggtcgatcacagtggttatattcatctacctggagtaatcacttctccataatcctaacaagtggagctttttatcacagattttacaatttccagtacacccacaatctttcaccaaggattcatcgcatggttgaacattatggtacatgtgaagatttagccatgaatttccttgttgcagacatcacaagaaaaccaccgatcaaaatcttgcctcaaaagttatttcaagatctgtataacaggaacacaaagtactccaaactggttcagatcttcgaacttcgacagagatgcatggagtctttagtggaaatttttggatacatgccattggtaaaatcccaaatcagaatggacccgctgttgtacaaggatcctgtgtcaaatctacgcaaacagtataggttattagagtga

Transcript

evm.model.Ap9.105

ATGAATGCAAAGAAGAGGTATTCTTTGATATTTTTGATCAGTTTGCTGTGCTGCAGTGCATTCATTGTATACAGAAAATCGACCCGTTTGTGGCGTCGGTCAACAAGGACAAGTTTTCGACCCAACGGCGGACTCCAGCTTCAACAGCAAAGGCTATGCTTCTTAGATATAAAAGATGAATATATTCTGCGAGATCATGCCGGTTTTCGGCATGAACGTGCGACAGTGCCGAAAGAAAAATGTACTATGGAAACATGTTTTGATAGGACGAAGTGTCTGAATGACTTTAAAGTTTATGTTTATCCAATTCAAACTGGCGAGAAGATTTCTCCTTTGTTCGGTAAATTGTTAAAGGTACTGAGGGAAAGTAGATTTTATACAGACGACCCGAAAAAGGCTTGTTTATTTATACCATCCGTCGATACTCTGGACCGCGATAATCTAAGCGAGGATTATGTGCACGATTTGCCTCCCAAGGTCTCGTCCTTGCCTCATTGGAATGGTGGAACTAACCATGTAATATTTAACCTCTTCTCTGGAACTTGGCCTGATTATTCTGAAGATTTACGCTTCGATACTGGCAAAGCGATTTTAGCGAAAGCATCGCTCTCAACGGATTTATTTAGACCTGGTTTTGACATAAGTTTTCCTCTGTTTCTGAAAAGTCATCCACAGAAAGGCAACGCTGTGGATGCTCCGTCGAGTTGTGCAGTATTTCCACTAAATAGGAAATATAAACTTGCCTTCAAAGGGAAACGTTATCTAAATGGTATAGGAAGCGAGTCTAGGAACTCATTTTACCATATTCACAACGGAAACGACATTGTGCTTTTAACAACTTGCAAACATGGAAAGAATTGGAGAAAAATCATGGATGAAAGATGCGAAAAGGACAATGAGGAATATGACAAGTATGACTATGACGAGCTTTTAAAAAATGCAACATTTTGTTTGGCTCCTCGTGGAAGGCGCCTGGGATCGTATCGATTCTTGGAGTCCCTCCAGGCTGGCTGTATTCCAGTGTTACTAAGCAACGGCTGGGAGCTCCCATTTTCCGAGGTGATTGATTGGAGCAAGGCTCTGATTCAGGGCGAAGAACGCCTCCTGACTGAAATCCCATCTGTTGTGAGATCCTACAGTAAGAAACAAATCCTCGCCATGAAGCAACAAGCTCTGTTTCTTTACGAGGCATATTTCTCATCTGTAGAGAAGATCTTGCTTACCACATTAGAGATGATTCGTTCACGATTATTTCCAAACAAAGCTGTCAGTAGACCAATGTGGAACACGTTTCCTGGAGCTCTAGTGACTAGGCCTCAATATTCCATGGATCCTAAGGACTTTCCTTTTTATAACATCAAGCTGGAAATTGAAGACGATAAATTCACTGCAGTCATTCACACCACCACAACTGTTGTCAGGGAATCATCAGCTCTTTCCAGATTAATCAAGAATGTTGGGCAATCAAAGTTTATTTCTAAGATTGTAGTATTATGGACATCTGATGCTCCTATCGCTCACAAGAAGAGATGGCCACAAATAAATGCTCCATTGGTCATTGTGAGACCAGAAACTAAGACAGGAAACAGTCGATTTGTGCCCAGGACAGTGATAGAAACAAATGCCATTTTATCCTTGGATGAGGATATCAAACTTAATTCTGATGAGATTGATTTTGCGTTTTCTACATGGAGACAGTTTCCTGACCGCATTGTAGGTTTTCCAGCCAGAGACCACTACTGGGACAGTGGTCGATCACAGTGGTTATATTCATCTACCTGGAGTAATCACTTCTCCATAATCCTAACAAGTGGAGCTTTTTATCACAGATTTTACAATTTCCAGTACACCCACAATCTTTCACCAAGGATTCATCGCATGGTTGAACATTATGGTACATGTGAAGATTTAGCCATGAATTTCCTTGTTGCAGACATCACAAGAAAACCACCGATCAAAATCTTGCCTCAAAAGTTATTTCAAGATCTGTATAACAGGAACACAAAGTACTCCAAACTGGTTCAGATCTTCGAACTTCGACAGAGATGCATGGAGTCTTTAGTGGAAATTTTTGGATACATGCCATTGGTAAAATCCCAAATCAGAATGGACCCGCTGTTGTACAAGGATCCTGTGTCAAATCTACGCAAACAGTATAGGTTATTAGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5IGR8	Exostosin-1a OS=Danio rerio OX=7955 GN=ext1a PE=2 SV=1
A5D7I4	Exostosin-1 OS=Bos taurus OX=9913 GN=EXT1 PE=2 SV=1
Q16394	Exostosin-1 OS=Homo sapiens OX=9606 GN=EXT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001759 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03016 all species →	Exostosin	Exostosin family	Family	Interproscan
PF09258 all species →	Glyco_transf_64	Glycosyl transferase family 64 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040911 all species →	Domain	Exostosin, GT47 domain	Interproscan
IPR004263 all species →	Family	Exostosin-like	Interproscan
IPR015338 all species →	Domain	Glycosyl transferase 64 domain	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48261 all species →	ACETYLGLUCOSAMINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02366	EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1	EC:2.4.1.224 EC:2.4.1.225	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.