Detailed information of evm.model.Ap9.1065 in Astrangia poculata

Genomic Location: Ap9:11363177...11365225
NR annotation: XP_020621271.1, Niemann-Pick C1 protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6T3U3NPC1-like intracellular cholesterol transporter 1 OS=Rattus norvegicus OX=10116 GN=Npc1l1 PE=1 SV=1
Q9UHC9NPC1-like intracellular cholesterol transporter 1 OS=Homo sapiens OX=9606 GN=NPC1L1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001652 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap9.1065. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for evm.model.Ap9.1065. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR45727
all species →		NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015918
all species →		Biological Processsterol transportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0032934
all species →		Molecular Functionsterol bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01540ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta-CD moleculesko04090deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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