Gene detail

Detailed information of evm.model.Ap9.1091 in Astrangia poculata

Genomic Location: Ap9:11646352...11656582
NR annotation: XP_020611667.1, WEB family protein At5g16730, chloroplastic-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1091

atggcttcactctttcgctgcacggcctcgaaattgtcatctgctcagattctgagacagccgtcattggggaagaacttggttgcaatttcggcgtttttcagcacatcctcaagtcacaatgccatcaaaaatgtcacggttattggcagtggactcatgggtgctggaattgctcaggtagcagcagcaacaaatcaccaggttacaatggttgatcaaaccaatgcgatcctgacaaaatcatgtggctccattgagaaaagccttggaaaagtcgctaagaaaaagttcaaagatgacccagagggtgctaaaaactttgttgctgaaactctttcaaggatacatatcacaacagacccaacagcaaatattgccgaaacagatctggtgatagaagccatagtggaaaacatacgcaccaaacacaaactctttacagagctggacaaagctgctcccagtcacaccatcttcgcctccaacacatcttctctgccaataaatgaaatagcaagtgtcacaaaacgaaaggacaaatttggaggacttcacttttttaatcctgttccattaatgaaattggttgaggttgttcgtattccagaaacaacagatgagacatttgatgccctgttccagttcagcaaggagctcggcaaagtaccggtgtcttgtaaggatactcctgggttcattgttaatcgactgcttgttccatacataatggaatctgtcagaatgcttgagagaggtgacgcatcagcaaaggatattgacacagcaatgaagcttggagcagcttcatcacttattgataagctctttcgtgaagaattgaataatattatatttgccaaaaaagttcagcctaaagagagccttcgttacactggaatcttcctaatcgaaaagcaaataagggaaaaacaacgcacaggagaagttatgaccaggtacgggagatcatttcggcttgaaaaagaactctgcttggcgagaaagaagattgcaaagttcgagactgtagaacgaagttcttacaaaaggaaggtcgatcttcaacaggagtttgtcgttgtgtcgaaaaaagttggccgtttaaaaacgtcgtgttgcagctctttggaaaaagaaaaccggatagagcaagagattttgctttgccacgataagacttgccatttagagtcgcacttgtcggtgtgtcattgcaaagttaaggatttggaaaccacaaatgaaagtttggagaataaaaaggaagctttacaccgagagctgttgaaaacgcacgagaaaaatgctgacttcgaaatttcgctcgaaagcatacagcgggaaagaggtgatgtcaaaaatggcgaagcacaactgtgcgcggaatcttatgagtatgcgagtaagataagaaaacttgaaagcgaaaaggaattcctccaagcagagcggatgaaattacaggaaattattactacgcttgaaaaccagattgatacttcaattgatgggaagtctgaattgtcgactgagttgaaaaaaggaaagaaaagtgtaaaagaagacaatgcagaccgtgccagtgtctttgacaaacgctttaaagatggtggaaatcacgaaaagtcgaccctaaatcatcattttattgtggatacccaccgcgaaatgtccacagatgaaatccgcaaactccacgaggtcgccacagatttagaaacaaagtacgccacctgcaagacagagctggaaaaacaacaaacgctaatcacaacaatcattacacgcgagaaagctgcctcgcgcgcagtacgcgagaccgcgcgagatttgcagctgcgactcgacaaaagtcggcgagagattgaaaagcgtgacgttatgatcaaaacactggcggaggacaaaagaggtctcgagcataacattcaggaatttaagcgtagttatcaacaaaaatgcgattttggtgacgctgaacttgacgaaaaaagaactctaagtgcgaggcaaaggataggggcacacgcagtcaatacagaactgcaggattacgtcggaaaatatcaacaaggggtcgagattgttagccaagagcccaacaggcaaaaaactgtctcgtcggggtatcattcacacgaacaaaaggcggtcacttcgctgcacaaagggaacaagtcggcccacgatgattatgcaaaactcaaccttggaaccatcgagagcgtaagcgcaagcaaatcgcttcggcaagatcacggcgaaaggaagaaagacatttttcgcggtcgtttgtcaaataaaaggcaggaaaagttaatagaggctcgttcaaggcggcaatttcacgcaagtgtgaaaagcgccaatgagagcgaagatctcgagtggaacgaaccacacgctgattacgaaagcaaataccgcgagtgttgtcacgaacagaacgtgctaaagacgttgttgatggcggcagaagataggagagcgccaactgcagagatggaggacgacttggatgaaagtttaacaggatataacggcaagtgcgaggaatatcaaggtggcgtcgatggagttcgatcggagaacggtgcggcagaaatcgagaattgttctctgaccctccaagctcaagagctcaaacagcctttggatgtttctaacggcgacgagatggcgtcctcgaccgtagaaagtgagtttgtgaatggccatgcgagtcctgtgccggacgaagagaaaaacgattttgtagctaacgtggatcaggcgacaactgatttcgactcattgaagacgcgcaaagaagaattggagcagttgtgcgaggtgttaatggacgaacgagataaggcaacgcgttcgctcagagagcgagatgaagaagtgctgcggttacgaatgcgttctgtggaaactgaacacgagaaagcggatttgaaaatccaattagccaaagcccttagtcgttcagacctgcttgaaaatgagctggcgtccgttaaagaagagaacgaaaaactacgagctgaggtcgagagactgaggaaaagaattgaagaattagaggcggagaactgtgacctcaaatgtaaacttcaagcgcgtgctgatcaagatcacgctgatggaaagaaagcggcagcggatttggaaagcgctgagttaacacgcgcatcggcggaagaacccgtttctgcgctggacgaaggaggggatgaaagtaatcgtcaagaacaggagcctcctcacgtcgcggacaaggcaacaacagtagaaagcgctgcaaatgagaacgcacctgcggcagacgaagttgtcgtgaaacgaagagaaaacaggcgcaccgcaccgaattattatcgtcactcgttcgctgggagccttccgagaccattccacagcttcgagctgcactcgcaacattcctttgatcacggctcgaagcacgagcggtcggaatcgattcattctgatacgagcgaagatagcgagtctgggagtcatgcggctgcaaatgtgccaagttttatgagaaggaaggtgaataacccgtacctcaaatctggttttagccccgtacagttcaattatcagccgctacccgagagcatctcgagcagacgcgatagctggctggagggggtacgagctagagggggcagcctgaacagagcacacgacagctcttccgatagcgaaagtagcgggataggaagcagtgtgagcgcctcggtggaaaagaatcaggaatgggttgaacgtgatgagatcgctaatgcgctgagctctgcgcctgatgagctagtgaaacacgcagaaaatgccgagaattccaccaaggatttgccctcggcgtcagcacagtctacgcacgaagaccgcgaaaacgtttcatcagaaaagacacaagttatccaatcgaacggtcagtctcaagttgacggagtagaccagcagagaactgaacacgtttctgatttagtgaacatgtggcaaagcaaaacaacagaagcgctggacgtgtga

Transcript

evm.model.Ap9.1091

ATGGCTTCACTCTTTCGCTGCACGGCCTCGAAATTGTCATCTGCTCAGATTCTGAGACAGCCGTCATTGGGGAAGAACTTGGTTGCAATTTCGGCGTTTTTCAGCACATCCTCAAGTCACAATGCCATCAAAAATGTCACGGTTATTGGCAGTGGACTCATGGGTGCTGGAATTGCTCAGGTAGCAGCAGCAACAAATCACCAGGTTACAATGGTTGATCAAACCAATGCGATCCTGACAAAATCATGTGGCTCCATTGAGAAAAGCCTTGGAAAAGTCGCTAAGAAAAAGTTCAAAGATGACCCAGAGGGTGCTAAAAACTTTGTTGCTGAAACTCTTTCAAGGATACATATCACAACAGACCCAACAGCAAATATTGCCGAAACAGATCTGGTGATAGAAGCCATAGTGGAAAACATACGCACCAAACACAAACTCTTTACAGAGCTGGACAAAGCTGCTCCCAGTCACACCATCTTCGCCTCCAACACATCTTCTCTGCCAATAAATGAAATAGCAAGTGTCACAAAACGAAAGGACAAATTTGGAGGACTTCACTTTTTTAATCCTGTTCCATTAATGAAATTGGTTGAGGTTGTTCGTATTCCAGAAACAACAGATGAGACATTTGATGCCCTGTTCCAGTTCAGCAAGGAGCTCGGCAAAGTACCGGTGTCTTGTAAGGATACTCCTGGGTTCATTGTTAATCGACTGCTTGTTCCATACATAATGGAATCTGTCAGAATGCTTGAGAGAGGTGACGCATCAGCAAAGGATATTGACACAGCAATGAAGCTTGGAGCAGCTTCATCACTTATTGATAAGCTCTTTCGTGAAGAATTGAATAATATTATATTTGCCAAAAAAGTTCAGCCTAAAGAGAGCCTTCGTTACACTGGAATCTTCCTAATCGAAAAGCAAATAAGGGAAAAACAACGCACAGGAGAAGTTATGACCAGGTACGGGAGATCATTTCGGCTTGAAAAAGAACTCTGCTTGGCGAGAAAGAAGATTGCAAAGTTCGAGACTGTAGAACGAAGTTCTTACAAAAGGAAGGTCGATCTTCAACAGGAGTTTGTCGTTGTGTCGAAAAAAGTTGGCCGTTTAAAAACGTCGTGTTGCAGCTCTTTGGAAAAAGAAAACCGGATAGAGCAAGAGATTTTGCTTTGCCACGATAAGACTTGCCATTTAGAGTCGCACTTGTCGGTGTGTCATTGCAAAGTTAAGGATTTGGAAACCACAAATGAAAGTTTGGAGAATAAAAAGGAAGCTTTACACCGAGAGCTGTTGAAAACGCACGAGAAAAATGCTGACTTCGAAATTTCGCTCGAAAGCATACAGCGGGAAAGAGGTGATGTCAAAAATGGCGAAGCACAACTGTGCGCGGAATCTTATGAGTATGCGAGTAAGATAAGAAAACTTGAAAGCGAAAAGGAATTCCTCCAAGCAGAGCGGATGAAATTACAGGAAATTATTACTACGCTTGAAAACCAGATTGATACTTCAATTGATGGGAAGTCTGAATTGTCGACTGAGTTGAAAAAAGGAAAGAAAAGTGTAAAAGAAGACAATGCAGACCGTGCCAGTGTCTTTGACAAACGCTTTAAAGATGGTGGAAATCACGAAAAGTCGACCCTAAATCATCATTTTATTGTGGATACCCACCGCGAAATGTCCACAGATGAAATCCGCAAACTCCACGAGGTCGCCACAGATTTAGAAACAAAGTACGCCACCTGCAAGACAGAGCTGGAAAAACAACAAACGCTAATCACAACAATCATTACACGCGAGAAAGCTGCCTCGCGCGCAGTACGCGAGACCGCGCGAGATTTGCAGCTGCGACTCGACAAAAGTCGGCGAGAGATTGAAAAGCGTGACGTTATGATCAAAACACTGGCGGAGGACAAAAGAGGTCTCGAGCATAACATTCAGGAATTTAAGCGTAGTTATCAACAAAAATGCGATTTTGGTGACGCTGAACTTGACGAAAAAAGAACTCTAAGTGCGAGGCAAAGGATAGGGGCACACGCAGTCAATACAGAACTGCAGGATTACGTCGGAAAATATCAACAAGGGGTCGAGATTGTTAGCCAAGAGCCCAACAGGCAAAAAACTGTCTCGTCGGGGTATCATTCACACGAACAAAAGGCGGTCACTTCGCTGCACAAAGGGAACAAGTCGGCCCACGATGATTATGCAAAACTCAACCTTGGAACCATCGAGAGCGTAAGCGCAAGCAAATCGCTTCGGCAAGATCACGGCGAAAGGAAGAAAGACATTTTTCGCGGTCGTTTGTCAAATAAAAGGCAGGAAAAGTTAATAGAGGCTCGTTCAAGGCGGCAATTTCACGCAAGTGTGAAAAGCGCCAATGAGAGCGAAGATCTCGAGTGGAACGAACCACACGCTGATTACGAAAGCAAATACCGCGAGTGTTGTCACGAACAGAACGTGCTAAAGACGTTGTTGATGGCGGCAGAAGATAGGAGAGCGCCAACTGCAGAGATGGAGGACGACTTGGATGAAAGTTTAACAGGATATAACGGCAAGTGCGAGGAATATCAAGGTGGCGTCGATGGAGTTCGATCGGAGAACGGTGCGGCAGAAATCGAGAATTGTTCTCTGACCCTCCAAGCTCAAGAGCTCAAACAGCCTTTGGATGTTTCTAACGGCGACGAGATGGCGTCCTCGACCGTAGAAAGTGAGTTTGTGAATGGCCATGCGAGTCCTGTGCCGGACGAAGAGAAAAACGATTTTGTAGCTAACGTGGATCAGGCGACAACTGATTTCGACTCATTGAAGACGCGCAAAGAAGAATTGGAGCAGTTGTGCGAGGTGTTAATGGACGAACGAGATAAGGCAACGCGTTCGCTCAGAGAGCGAGATGAAGAAGTGCTGCGGTTACGAATGCGTTCTGTGGAAACTGAACACGAGAAAGCGGATTTGAAAATCCAATTAGCCAAAGCCCTTAGTCGTTCAGACCTGCTTGAAAATGAGCTGGCGTCCGTTAAAGAAGAGAACGAAAAACTACGAGCTGAGGTCGAGAGACTGAGGAAAAGAATTGAAGAATTAGAGGCGGAGAACTGTGACCTCAAATGTAAACTTCAAGCGCGTGCTGATCAAGATCACGCTGATGGAAAGAAAGCGGCAGCGGATTTGGAAAGCGCTGAGTTAACACGCGCATCGGCGGAAGAACCCGTTTCTGCGCTGGACGAAGGAGGGGATGAAAGTAATCGTCAAGAACAGGAGCCTCCTCACGTCGCGGACAAGGCAACAACAGTAGAAAGCGCTGCAAATGAGAACGCACCTGCGGCAGACGAAGTTGTCGTGAAACGAAGAGAAAACAGGCGCACCGCACCGAATTATTATCGTCACTCGTTCGCTGGGAGCCTTCCGAGACCATTCCACAGCTTCGAGCTGCACTCGCAACATTCCTTTGATCACGGCTCGAAGCACGAGCGGTCGGAATCGATTCATTCTGATACGAGCGAAGATAGCGAGTCTGGGAGTCATGCGGCTGCAAATGTGCCAAGTTTTATGAGAAGGAAGGTGAATAACCCGTACCTCAAATCTGGTTTTAGCCCCGTACAGTTCAATTATCAGCCGCTACCCGAGAGCATCTCGAGCAGACGCGATAGCTGGCTGGAGGGGGTACGAGCTAGAGGGGGCAGCCTGAACAGAGCACACGACAGCTCTTCCGATAGCGAAAGTAGCGGGATAGGAAGCAGTGTGAGCGCCTCGGTGGAAAAGAATCAGGAATGGGTTGAACGTGATGAGATCGCTAATGCGCTGAGCTCTGCGCCTGATGAGCTAGTGAAACACGCAGAAAATGCCGAGAATTCCACCAAGGATTTGCCCTCGGCGTCAGCACAGTCTACGCACGAAGACCGCGAAAACGTTTCATCAGAAAAGACACAAGTTATCCAATCGAACGGTCAGTCTCAAGTTGACGGAGTAGACCAGCAGAGAACTGAACACGTTTCTGATTTAGTGAACATGTGGCAAAGCAAAACAACAGAAGCGCTGGACGTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16836	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=HADH PE=1 SV=3
P00348	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HADH PE=1 SV=2
Q9WVK7	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hadh PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004654 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00725 all species →	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR006180 all species →	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan
IPR052242 all species →	Family	Mitochondrial 3-hydroxyacyl-CoA dehydrogenase	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR006108 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43561 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0003857 all species →	Molecular Function	3-hydroxyacyl-CoA dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.1091.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.