Gene detail

Detailed information of evm.model.Ap9.1161 in Astrangia poculata

Genomic Location: Ap9:12282544...12320246
NR annotation: XP_027039583.1, rho GTPase-activating protein 18-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1161

atggcgctacgtataaaaggacgtggtggtcatgcattggaccaactggaatacgacatattttggacagaattcagggccattgaggagagtagaatccctgtagctgatgaggaccatgatgaagagccctttaaagaaccccaaggagaatgtgagcaagaaattcagtggctcaaagaagctggttttgatgctattgtgaagaagtacaatgatagcaaagaaattgatcctaaggatgtcgattttgaaaaaatcactggttcccttacaaggaaacaagcagaagctgttaggaaaagaatagacactctaaaccaaagcactaagaaaaaacttggtttacatgtgcccccctcaaaacattctgccagcagctatccaacagatgtcaggacgattttccctgtcaaaactaatggacagcctagcaatgcagagcagacgaatacgacaagaccggcactactgagaaaatcatacagtgaaggaatacatgttatcaaaccactgtcacttgagaatggtggtatggaaaatgaagtaggacattcatgcagacattctcattctactggtgtactctcaagtcaaacagataaagagtttacaggagttttcttacacccagattgtgcaatggagagaagagcaagtgacgaaatacgattacaaacaggaatccagcaagcacggcatcctcatggaggatcagtgttttatgtaactggcacaacaaaacaagaactcttcaacacagcagaaaaaacaaaagaatccagtgtggatgacattggtaattgtgatttaaaaaatctcagcatatcgccaccagataccagcccagactcttttcacgaggtgcctgttgactgtcctgaagaagtttcagttgatgttccatcagacaaggctcatggaaaaccaaatggaaaaataagttgtgatgaaaagcctttcaaagaacctcaatttcctagactacctaactttacacttaccaaggatgaattaggtgtgacaagagtacaagatatctcctcacaggacatggacaaagtacgctctctatcactcatagaacttacagccctgttcgactctcatggactagcactgcaccgacggaagcctgtcaaaaggaaagttagagaatctggtatttttggagtacctctgcagaatctaatacaagaggacaaaatgaaaaacgaaaaaacatcagtgccttctttttatattgagcttgtcagatatttggagttaaaaggtttgaaggaagaaggtatcttgagagttcctggaaatgcaggaagggtcaaggcaataagagaagaagtcgaagaaaaatttaatgatggatgttttgtattggaggacagaagagcacatgactgtgcagccctgctaaaacaattcttacgagaacttccttttccgcttttaactcaagaatatcaaccaacatttgcatctgtggaaagtatacctgatagaaaacaacagcttcaggcattgaatcttttaattctgttgctgccagcagttcatagagactgtttgaagattcttgttcagtttttgagccgagtggtagcccatgaaaaacagaacaagatgggcttgaacagtgtggctatgatcatggctccaaatcttttcctttgcaccaacaaatcgcaacctacattacaagaaataaagcaggctcaaggcaccgtgaacattgtaagaatgttaatcaagtatcaagctattttgtggacgatccctggattcatggtgatgcaggttcggtatctgtatgaagcagaaggaaacaagaaagctaaagacgccaaagcggttaggaagttactcgcaaaacgtgctcgaggtgatggagtgggtgggtctccacaaaagaaacattcgacaggaggagaggctcctttggcctccatggattctgattatgaaaacaacatcatacgagtcaaagcaccgatgctgaacaaagttctaatggcgattcaactcactgaattcatgcgagctggagacattgtttccaagttccgacgccggccatctccgtccgaaggccacattgaaagttgcaaactttctgactcgtcatctagtggttcttatcgcaactgcctcaaccctcacaacaacaacaagtttgcttcagataatttctttctctatgagtcaggaggcaacataggtgaacgatgccttgatcatgacacgaacatgatggcgctgcgtagagttaatccgcacgccgagtggattgtcaaaccacacgagcaacacctcaacttttga

Transcript

evm.model.Ap9.1161

ATGGCGCTACGTATAAAAGGACGTGGTGGTCATGCATTGGACCAACTGGAATACGACATATTTTGGACAGAATTCAGGGCCATTGAGGAGAGTAGAATCCCTGTAGCTGATGAGGACCATGATGAAGAGCCCTTTAAAGAACCCCAAGGAGAATGTGAGCAAGAAATTCAGTGGCTCAAAGAAGCTGGTTTTGATGCTATTGTGAAGAAGTACAATGATAGCAAAGAAATTGATCCTAAGGATGTCGATTTTGAAAAAATCACTGGTTCCCTTACAAGGAAACAAGCAGAAGCTGTTAGGAAAAGAATAGACACTCTAAACCAAAGCACTAAGAAAAAACTTGGTTTACATGTGCCCCCCTCAAAACATTCTGCCAGCAGCTATCCAACAGATGTCAGGACGATTTTCCCTGTCAAAACTAATGGACAGCCTAGCAATGCAGAGCAGACGAATACGACAAGACCGGCACTACTGAGAAAATCATACAGTGAAGGAATACATGTTATCAAACCACTGTCACTTGAGAATGGTGGTATGGAAAATGAAGTAGGACATTCATGCAGACATTCTCATTCTACTGGTGTACTCTCAAGTCAAACAGATAAAGAGTTTACAGGAGTTTTCTTACACCCAGATTGTGCAATGGAGAGAAGAGCAAGTGACGAAATACGATTACAAACAGGAATCCAGCAAGCACGGCATCCTCATGGAGGATCAGTGTTTTATGTAACTGGCACAACAAAACAAGAACTCTTCAACACAGCAGAAAAAACAAAAGAATCCAGTGTGGATGACATTGGTAATTGTGATTTAAAAAATCTCAGCATATCGCCACCAGATACCAGCCCAGACTCTTTTCACGAGGTGCCTGTTGACTGTCCTGAAGAAGTTTCAGTTGATGTTCCATCAGACAAGGCTCATGGAAAACCAAATGGAAAAATAAGTTGTGATGAAAAGCCTTTCAAAGAACCTCAATTTCCTAGACTACCTAACTTTACACTTACCAAGGATGAATTAGGTGTGACAAGAGTACAAGATATCTCCTCACAGGACATGGACAAAGTACGCTCTCTATCACTCATAGAACTTACAGCCCTGTTCGACTCTCATGGACTAGCACTGCACCGACGGAAGCCTGTCAAAAGGAAAGTTAGAGAATCTGGTATTTTTGGAGTACCTCTGCAGAATCTAATACAAGAGGACAAAATGAAAAACGAAAAAACATCAGTGCCTTCTTTTTATATTGAGCTTGTCAGATATTTGGAGTTAAAAGGTTTGAAGGAAGAAGGTATCTTGAGAGTTCCTGGAAATGCAGGAAGGGTCAAGGCAATAAGAGAAGAAGTCGAAGAAAAATTTAATGATGGATGTTTTGTATTGGAGGACAGAAGAGCACATGACTGTGCAGCCCTGCTAAAACAATTCTTACGAGAACTTCCTTTTCCGCTTTTAACTCAAGAATATCAACCAACATTTGCATCTGTGGAAAGTATACCTGATAGAAAACAACAGCTTCAGGCATTGAATCTTTTAATTCTGTTGCTGCCAGCAGTTCATAGAGACTGTTTGAAGATTCTTGTTCAGTTTTTGAGCCGAGTGGTAGCCCATGAAAAACAGAACAAGATGGGCTTGAACAGTGTGGCTATGATCATGGCTCCAAATCTTTTCCTTTGCACCAACAAATCGCAACCTACATTACAAGAAATAAAGCAGGCTCAAGGCACCGTGAACATTGTAAGAATGTTAATCAAGTATCAAGCTATTTTGTGGACGATCCCTGGATTCATGGTGATGCAGGTTCGGTATCTGTATGAAGCAGAAGGAAACAAGAAAGCTAAAGACGCCAAAGCGGTTAGGAAGTTACTCGCAAAACGTGCTCGAGGTGATGGAGTGGGTGGGTCTCCACAAAAGAAACATTCGACAGGAGGAGAGGCTCCTTTGGCCTCCATGGATTCTGATTATGAAAACAACATCATACGAGTCAAAGCACCGATGCTGAACAAAGTTCTAATGGCGATTCAACTCACTGAATTCATGCGAGCTGGAGACATTGTTTCCAAGTTCCGACGCCGGCCATCTCCGTCCGAAGGCCACATTGAAAGTTGCAAACTTTCTGACTCGTCATCTAGTGGTTCTTATCGCAACTGCCTCAACCCTCACAACAACAACAAGTTTGCTTCAGATAATTTCTTTCTCTATGAGTCAGGAGGCAACATAGGTGAACGATGCCTTGATCATGACACGAACATGATGGCGCTGCGTAGAGTTAATCCGCACGCCGAGTGGATTGTCAAACCACACGAGCAACACCTCAACTTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K0Q5	Rho GTPase-activating protein 18 OS=Mus musculus OX=10090 GN=Arhgap18 PE=1 SV=1
Q8N392	Rho GTPase-activating protein 18 OS=Homo sapiens OX=9606 GN=ARHGAP18 PE=1 SV=3
Q8BN58	Rho GTPase-activating protein 28 OS=Mus musculus OX=10090 GN=Arhgap28 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002600 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14963 all species →	RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030833 all species →	Biological Process	regulation of actin filament polymerization	Interproscan
GO:0051056 all species →	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20639	ARHGAP18_28_40; Rho GTPase-activating protein 18/28/40	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.