Genomic Location: Ap9:12585229...12608030
NR annotation: KAJ7337809.1, hypothetical protein OS493_007966 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.1179 |
| Transcript |
| evm.model.Ap9.1179 |
| Protein |
| evm.model.Ap9.1179 |
| UniProt accession | Description |
|---|---|
| Q80U58 | Pumilio homolog 2 OS=Mus musculus OX=10090 GN=Pum2 PE=1 SV=2 |
| Q8TB72 | Pumilio homolog 2 OS=Homo sapiens OX=9606 GN=PUM2 PE=1 SV=2 |
| E3WDQ9 | Pumilio homolog 2 OS=Xenopus laevis OX=8355 GN=pum2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003727 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00806 all species → | PUF | Pumilio-family RNA binding repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033712 all species → | Domain | Pumilio, RNA binding domain | Interproscan |
| IPR001313 all species → | Repeat | Pumilio RNA-binding repeat | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR033133 all species → | Domain | Pumilio homology domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12537 all species → | RNA BINDING PROTEIN PUMILIO-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0003730 all species → | Molecular Function | mRNA 3'-UTR binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0010608 all species → | Biological Process | post-transcriptional regulation of gene expression | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17943 | PUM; pumilio RNA-binding family | - | Spinocerebellar ataxia | ko05017 | deepkoala |
Transcript abundance of evm.model.Ap9.1179 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
