Detailed information of evm.model.Ap9.1217 in Astrangia poculata

Genomic Location: Ap9:13203355...13219537
NR annotation: XP_020617915.1, tRNA-splicing endonuclease subunit Sen2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5ZIN2tRNA-splicing endonuclease subunit Sen2 OS=Gallus gallus OX=9031 GN=TSEN2 PE=2 SV=1
Q8NCE0tRNA-splicing endonuclease subunit Sen2 OS=Homo sapiens OX=9606 GN=TSEN2 PE=1 SV=2
Q5M954tRNA-splicing endonuclease subunit Sen2 OS=Rattus norvegicus OX=10116 GN=Tsen2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005801 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02778
all species →		tRNA_int_endo_NtRNA intron endonuclease, N-terminal domainDomainInterproscan
PF01974
all species →		tRNA_int_endotRNA intron endonuclease, catalytic C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006678
all species →		DomaintRNA intron endonuclease, N-terminalInterproscan
IPR011856
all species →		Homologous_superfamilytRNA endonuclease-like domain superfamilyInterproscan
IPR016589
all species →		FamilytRNA-splicing endonuclease, SEN2 subunitInterproscan
IPR006677
all species →		DomaintRNA intron endonuclease, catalytic domain-likeInterproscan
IPR036167
all species →		Homologous_superfamilytRNA intron endonuclease, catalytic domain-like superfamilyInterproscan
IPR006676
all species →		FamilytRNA-splicing endonucleaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21227
all species →		TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000213
all species →		Molecular FunctiontRNA-intron endonuclease activityInterproscan
GO:0006388
all species →		Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligationInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0000214
all species →		Cellular ComponenttRNA-intron endonuclease complexInterproscan
GO:0000379
all species →		Biological ProcesstRNA-type intron splice site recognition and cleavageInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15322TSEN2; tRNA-splicing endonuclease subunit Sen2EC:4.6.1.16
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP