Genomic Location: Ap9:1137390...1158043
NR annotation: KAJ7361823.1, proteasome regulatory particle base subunit [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap9.124.1.5f15e5c1 |
| Transcript |
| evm.model.Ap9.124.1.5f15e5c1 |
| Protein |
| evm.model.Ap9.124.1.5f15e5c1 |
| UniProt accession | Description |
|---|---|
| Q3SZI6 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus OX=9913 GN=RPN2 PE=2 SV=1 |
| F1PCT7 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Canis lupus familiaris OX=9615 GN=RPN2 PE=1 SV=3 |
| P04844 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens OX=9606 GN=RPN2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005039 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05817 all species → | Ribophorin_II | Oligosaccharyltransferase subunit Ribophorin II | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008814 all species → | Family | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12640 all species → | RIBOPHORIN II | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006487 all species → | Biological Process | protein N-linked glycosylation | Interproscan |
| GO:0008250 all species → | Cellular Component | oligosaccharyltransferase complex | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12667 | RPN2, SWP1; dolichyl-diphosphooligosaccharide---protein glycosyltransferase subunit 2 (ribophorin II) | - | Protein processing in endoplasmic reticulum | ko04141 | deepkoala |
Transcript abundance of evm.model.Ap9.124.1.5f15e5c1 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
