Gene detail

Detailed information of evm.model.Ap9.1240_evm.model.Ap9.1241 in Astrangia poculata

Genomic Location: Ap9:13382826...13392383
NR annotation: XP_020605835.1, E3 ubiquitin-protein ligase MIB2-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1240_evm.model.Ap9.1241

atgccaacatcttcaagcacactttcttatgtgcagaaggacacgtcccttcagacccttcagcatgaaagtgcacgggagcacgagcaagatccagaatatgcagccagcacattcagggtgggcgttcgagttgtccgtggcgaggactggccgcctgatgatatcgaaactgatggcggagaaggattcgtaggaacagttgttgaagttggaagaaattctgccagtgaagctgagaacatggtagtgatacagtgggatatgggaactcgtgaagtctacagagcgggctgtaatggacactttgatctttgtgttttggataattcttccgttggtataaagcattcaggcttcatgtgctgtgcatgcaagcaagacccaatttttggaatacgttggaactgctcggattgcaaggattccttcataaacctgtgtacatcatgttacatggaagatgaacacagtacagaccatgctttcaagagatatgatgcttcaggtgtcaatggaattcccgttgaaaaaaggagtgccacgagaaaaacgcaagcacgagagatttttccaggtgccaaggtttcaaggggtccagactgggaatatggtaaccatgatagcgaaacgtttggtaccgtgacgaaaataacaaactggcagggaaacccagcaagtgcagctgatgtctcatgggagtctggtacagagggtacgtacaggctaggctaccaaggaaaggtggacttgatatgcgtaactgcagggtctggtggtctcctctacaaatcacatttaccaaaactcggacccactcaacagatattagacgaaacagtacaaatcagagatgaattaacgagtcttactctgtcgtctaaagctgatgcagagatacagcagtctccaactatgacagatgacaatcgtaacacttgcccgccgagtgctgcatctggtgtaagggacttaatgtcccagagagttgctggaagagttgagccagggtcgattcccttaagtgatgcagctgggacttcgcaagatttactgaaggcatcgagacatccactacacaaggcttcgattaatggagaatggaacaaagtgaagatgcttcttagagaggggaaagatgtagaccaaagggataagttttcactgacgccgcttcatctagcagcttggtatggacacgagtctgttgcccgattgttgttagaacacggcgcagatgccaatgctgtagacagatttcagaaaacacctcttcaaaaggctgaacgtcacaaccatgaatcaatagtacagcttcttcttaggttaggtgcaaatccaacctatcaacagccgctcagtcttcagtcactttcaaaaatggcattcctggcagttgaccagagatctggcttcaatcttctacaagcctctgtgtacgaaggagattataacacagttgttgctgccagtgtataccttgacaatttcttaaaggagatggataaggtatcaacgcaaagtagtgcgaagatttttccaggaaaaaccgctagtaatatcctttttagcttgtacaaaaaaggccacaccaacattaaacagttgtacgagaaacatgcggagaaagccgccactttaacagagctgcacaaatgttctgacaacaatgatgcagaaatggccgttgagctggttttgcattacggtacggatgtaaacatcacggcaaatggaagtcgcacacctctgctatgggcgagcctgcgatcctccagtgtgttttttaagacacttcttgatcttggagctgaagcaaattttcaacgagaagaccagtgcacgcctttaataatggcgtcttactggaacaactgcatggccgtccgccttcttactgagacaggagtggatccagatgttcaatgtgactcgagtgatgcagcacttcatgtctcagcagtgaaaggatttattaccatttcaaagcttttgattgagtcaggatgcaacgttaacttgcagaacaacagcggtaaaacaccacttcatctggcagttcaaaatggacacaaacacttggttaaagttttgctagaaaacggtgctgatgtgacgatacgcaacaagcacgatccgaaagaaagattatttcttgttcgtggaaaggacaaaggaaggccggcctggcactatgtcatggtggagaaaccgttactgggtctgtttcataaacggacaaacggaggcaaactcgacgtagcggactttggaacagttgttgaatcagggtggggagagaatcctccagaagggaaagtggcagaaattgtggacaaatcaatcggctttcagaaggatgttcaaggcaagacacctcttcacgtcgcttgcgaaatgaaaaatgaaaaccttgaaattatcgagcttcttgtgaagcacagtgcagacattgatactcgcgacggagatggtttcacgtctttgcagatggcggcgattcgtggaaagatgaaacttgtcataaagcttgttgagctcaaagctgacgtcaacttaaccacaatggatggcagagatgcggctgacctggctcaattaaatgaagaaactgaaattgaagagttgcttaagttgaagagaagttcactcaaaaaactttggaatacattggtaaaaagatag

Transcript

evm.model.Ap9.1240_evm.model.Ap9.1241

TTTCTGTTTTTGTTCAGTCCAATGCCAACATCTTCAAGCACACTTTCTTATGTGCAGAAGGACACGTCCCTTCAGACCCTTCAGCATGAAAGTGCACGGGAGCACGAGCAAGATCCAGAATATGCAGCCAGCACATTCAGGGTGGGCGTTCGAGTTGTCCGTGGCGAGGACTGGCCGCCTGATGATATCGAAACTGATGGCGGAGAAGGATTCGTAGGAACAGTTGTTGAAGTTGGAAGAAATTCTGCCAGTGAAGCTGAGAACATGGTAGTGATACAGTGGGATATGGGAACTCGTGAAGTCTACAGAGCGGGCTGTAATGGACACTTTGATCTTTGTGTTTTGGATAATTCTTCCGTTGGTATAAAGCATTCAGGCTTCATGTGCTGTGCATGCAAGCAAGACCCAATTTTTGGAATACGTTGGAACTGCTCGGATTGCAAGGATTCCTTCATAAACCTGTGTACATCATGTTACATGGAAGATGAACACAGTACAGACCATGCTTTCAAGAGATATGATGCTTCAGGTGTCAATGGAATTCCCGTTGAAAAAAGGAGTGCCACGAGAAAAACGCAAGCACGAGAGATTTTTCCAGGTGCCAAGGTTTCAAGGGGTCCAGACTGGGAATATGGTAACCATGATAGCGAAACGTTTGGTACCGTGACGAAAATAACAAACTGGCAGGGAAACCCAGCAAGTGCAGCTGATGTCTCATGGGAGTCTGGTACAGAGGGTACGTACAGGCTAGGCTACCAAGGAAAGGTGGACTTGATATGCGTAACTGCAGGGTCTGGTGGTCTCCTCTACAAATCACATTTACCAAAACTCGGACCCACTCAACAGATATTAGACGAAACAGTACAAATCAGAGATGAATTAACGAGTCTTACTCTGTCGTCTAAAGCTGATGCAGAGATACAGCAGTCTCCAACTATGACAGATGACAATCGTAACACTTGCCCGCCGAGTGCTGCATCTGGTGTAAGGGACTTAATGTCCCAGAGAGTTGCTGGAAGAGTTGAGCCAGGGTCGATTCCCTTAAGTGATGCAGCTGGGACTTCGCAAGATTTACTGAAGGCATCGAGACATCCACTACACAAGGCTTCGATTAATGGAGAATGGAACAAAGTGAAGATGCTTCTTAGAGAGGGGAAAGATGTAGACCAAAGGGATAAGTTTTCACTGACGCCGCTTCATCTAGCAGCTTGGTATGGACACGAGTCTGTTGCCCGATTGTTGTTAGAACACGGCGCAGATGCCAATGCTGTAGACAGATTTCAGAAAACACCTCTTCAAAAGGCTGAACGTCACAACCATGAATCAATAGTACAGCTTCTTCTTAGGTTAGGTGCAAATCCAACCTATCAACAGCCGCTCAGTCTTCAGTCACTTTCAAAAATGGCATTCCTGGCAGTTGACCAGAGATCTGGCTTCAATCTTCTACAAGCCTCTGTGTACGAAGGAGATTATAACACAGTTGTTGCTGCCAGTGTATACCTTGACAATTTCTTAAAGGAGATGGATAAGGTATCAACGCAAAGTAGTGCGAAGATTTTTCCAGGAAAAACCGCTAGTAATATCCTTTTTAGCTTGTACAAAAAAGGCCACACCAACATTAAACAGTTGTACGAGAAACATGCGGAGAAAGCCGCCACTTTAACAGAGCTGCACAAATGTTCTGACAACAATGATGCAGAAATGGCCGTTGAGCTGGTTTTGCATTACGGTACGGATGTAAACATCACGGCAAATGGAAGTCGCACACCTCTGCTATGGGCGAGCCTGCGATCCTCCAGTGTGTTTTTTAAGACACTTCTTGATCTTGGAGCTGAAGCAAATTTTCAACGAGAAGACCAGTGCACGCCTTTAATAATGGCGTCTTACTGGAACAACTGCATGGCCGTCCGCCTTCTTACTGAGACAGGAGTGGATCCAGATGTTCAATGTGACTCGAGTGATGCAGCACTTCATGTCTCAGCAGTGAAAGGATTTATTACCATTTCAAAGCTTTTGATTGAGTCAGGATGCAACGTTAACTTGCAGAACAACAGCGGTAAAACACCACTTCATCTGGCAGTTCAAAATGGACACAAACACTTGGTTAAAGTTTTGCTAGAAAACGGTGCTGATGTGACGATACGCAACAAGCACGATCCGAAAGAAAGATTATTTCTTGTTCGTGGAAAGGACAAAGGAAGGCCGGCCTGGCACTATGTCATGGTGGAGAAACCGTTACTGGGTCTGTTTCATAAACGGACAAACGGAGGCAAACTCGACGTAGCGGACTTTGGAACAGTTGTTGAATCAGGGTGGGGAGAGAATCCTCCAGAAGGGAAAGTGGCAGAAATTGTGGACAAATCAATCGGCTTTCAGAAGGATGTTCAAGGCAAGACACCTCTTCACGTCGCTTGCGAAATGAAAAATGAAAACCTTGAAATTATCGAGCTTCTTGTGAAGCACAGTGCAGACATTGATACTCGCGACGGAGATGGTTTCACGTCTTTGCAGATGGCGGCGATTCGTGGAAAGATGAAACTTGTCATAAAGCTTGTTGAGCTCAAAGCTGACGTCAACTTAACCACAATGGATGGCAGAGATGCGGCTGACCTGGCTCAATTAAATGAAGAAACTGAAATTGAAGAGTTGCTTAAGTTGAAGAGAAGTTCACTCAAAAAACTTTGGAATACATTGGTAAAAAGATAGTGAAACTGATAAACACCATCAAAAACGTTTGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68LP1	E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus OX=10116 GN=Mib2 PE=1 SV=2
Q8R516	E3 ubiquitin-protein ligase MIB2 OS=Mus musculus OX=10090 GN=Mib2 PE=1 SV=2
Q96AX9	E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens OX=9606 GN=MIB2 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24202 all species →	E3 UBIQUITIN-PROTEIN LIGASE MIB2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.1240_evm.model.Ap9.1241.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.