Gene detail

Detailed information of evm.model.Ap9.1248 in Astrangia poculata

Genomic Location: Ap9:13504537...13521374
NR annotation: KAJ7388681.1, Acyl-coenzyme A oxidase (Acyl-CoA oxidase) [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap9.1248

atgaaatctgctgctaccaaagtgaatcctgacttagcaaaagagcgaggaaaagcttcatttaacacaacagagctgacttacctgcttcatgaaggacgacaaaagacggagagaaaaagattcctggagtcattattagtgaaggatcctgtctttagtaaagaagatgcatacatactggaccgcaaacatgcctatgaaagggccttacagaaaggattacgattggttgagctgaccaaggagcatcaaatcactgatccagaagacgtgtacattttagaaaggtttgcaacaagtcaatttccatatagcctgagcaaaggaatgttcattcccactataaagagtcagggaactgaacaacaaaaagccaagtggcttccccttgcagagtcctatcagatcattggaacttatgcacagactgaactaggtcatggtacttatgtgcgtggcctggagactacagcaacatatgataaaaggacgcaagagtttgtcatccactcaccgtcactgtcagcatgcaaatggtggccaggaaatttgggcaagtcttcaaactttgccactgtgcctgcaaggctaatagtagatggaaaggatcacggaatacagatgtttatagttcagctacgggatatgcagactcatcagcctctgcctggtataacaataggagacattggagccaagttttctgcaacatttaacggaggtgacaatggatacctaatgtttgatcatgtgcgagttccactcaaccaaatgctaatggcacttgcaaagctttctcctgatggaaccttcacaaaaccagcaaattcgaaattattatatggcaccatgagttttatacgtgcaacaattgtgttgggctctttctggcagttatcccgagccataactattgctattcggtacagtgcagtgcggcgacagagtcaactcaaaccgggtgaacctgaggctcagattatcgcctacaaaactcaacagtacaaactgttaccaggcttagccatggcctatgctacgaagtttacttttgaccatgtatggagattgttcaaagaaacgcaaaagaaaattgctgctggagacttatctatgttaccagaggtccatgccatcaccagtggtcttaaagcattcagctcgtcaacatccatgcatcatgcggagacatgtcgactggcctgtggtgggcatggttacttactgtgcagtggtctgcctgagttatacacattgttaaatgcagcctgtacttatgagggagataatgacgtcctttacttacaagtagctaggtatctgatgaaaagtgcttctcaagtgcaagagggcaaggcgcctccctcgctacttccatttttgtcacgaaaaccagagctgtgccctgtaacaagaggcgaaaaattcttggatcctcgagtgcagaggaagctttaccaagatagaacttcaagcgaggtgatgactgttgccggaagattgcaaagccgaatattatctggaatggattctgccgatgcttggaatgaagtgtctgtagacttgatacgctgtgctaagggctacagtaactgcgttatggtgttatatcaattggaatcaatggagaagctatctggtgtgagcaccaatttacgcagggtactcaaatctctggcagatttatttgtcctgtatggtatagctgagaattcaggcagttttcttgaggctggagttctggattgcgcccagattcaaaccatacgacagcaagtgtatgtcttgatggaaaaactcaggcctgaagcagtgtctctggtagacgcctttgattattcagattatgtgctcaattcagcgctgggacgctacgatggcaacgtatatgaagacctttttagatgggctcagagatcagtcttaaataaggaacaggttcagccaggctactacaaatacctgcggccattaatgaacagcaacaaatccaagctgtag

Transcript

evm.model.Ap9.1248

ATGAAATCTGCTGCTACCAAAGTGAATCCTGACTTAGCAAAAGAGCGAGGAAAAGCTTCATTTAACACAACAGAGCTGACTTACCTGCTTCATGAAGGACGACAAAAGACGGAGAGAAAAAGATTCCTGGAGTCATTATTAGTGAAGGATCCTGTCTTTAGTAAAGAAGATGCATACATACTGGACCGCAAACATGCCTATGAAAGGGCCTTACAGAAAGGATTACGATTGGTTGAGCTGACCAAGGAGCATCAAATCACTGATCCAGAAGACGTGTACATTTTAGAAAGGTTTGCAACAAGTCAATTTCCATATAGCCTGAGCAAAGGAATGTTCATTCCCACTATAAAGAGTCAGGGAACTGAACAACAAAAAGCCAAGTGGCTTCCCCTTGCAGAGTCCTATCAGATCATTGGAACTTATGCACAGACTGAACTAGGTCATGGTACTTATGTGCGTGGCCTGGAGACTACAGCAACATATGATAAAAGGACGCAAGAGTTTGTCATCCACTCACCGTCACTGTCAGCATGCAAATGGTGGCCAGGAAATTTGGGCAAGTCTTCAAACTTTGCCACTGTGCCTGCAAGGCTAATAGTAGATGGAAAGGATCACGGAATACAGATGTTTATAGTTCAGCTACGGGATATGCAGACTCATCAGCCTCTGCCTGGTATAACAATAGGAGACATTGGAGCCAAGTTTTCTGCAACATTTAACGGAGGTGACAATGGATACCTAATGTTTGATCATGTGCGAGTTCCACTCAACCAAATGCTAATGGCACTTGCAAAGCTTTCTCCTGATGGAACCTTCACAAAACCAGCAAATTCGAAATTATTATATGGCACCATGAGTTTTATACGTGCAACAATTGTGTTGGGCTCTTTCTGGCAGTTATCCCGAGCCATAACTATTGCTATTCGGTACAGTGCAGTGCGGCGACAGAGTCAACTCAAACCGGGTGAACCTGAGGCTCAGATTATCGCCTACAAAACTCAACAGTACAAACTGTTACCAGGCTTAGCCATGGCCTATGCTACGAAGTTTACTTTTGACCATGTATGGAGATTGTTCAAAGAAACGCAAAAGAAAATTGCTGCTGGAGACTTATCTATGTTACCAGAGGTCCATGCCATCACCAGTGGTCTTAAAGCATTCAGCTCGTCAACATCCATGCATCATGCGGAGACATGTCGACTGGCCTGTGGTGGGCATGGTTACTTACTGTGCAGTGGTCTGCCTGAGTTATACACATTGTTAAATGCAGCCTGTACTTATGAGGGAGATAATGACGTCCTTTACTTACAAGTAGCTAGGTATCTGATGAAAAGTGCTTCTCAAGTGCAAGAGGGCAAGGCGCCTCCCTCGCTACTTCCATTTTTGTCACGAAAACCAGAGCTGTGCCCTGTAACAAGAGGCGAAAAATTCTTGGATCCTCGAGTGCAGAGGAAGCTTTACCAAGATAGAACTTCAAGCGAGGTGATGACTGTTGCCGGAAGATTGCAAAGCCGAATATTATCTGGAATGGATTCTGCCGATGCTTGGAATGAAGTGTCTGTAGACTTGATACGCTGTGCTAAGGGCTACAGTAACTGCGTTATGGTGTTATATCAATTGGAATCAATGGAGAAGCTATCTGGTGTGAGCACCAATTTACGCAGGGTACTCAAATCTCTGGCAGATTTATTTGTCCTGTATGGTATAGCTGAGAATTCAGGCAGTTTTCTTGAGGCTGGAGTTCTGGATTGCGCCCAGATTCAAACCATACGACAGCAAGTGTATGTCTTGATGGAAAAACTCAGGCCTGAAGCAGTGTCTCTGGTAGACGCCTTTGATTATTCAGATTATGTGCTCAATTCAGCGCTGGGACGCTACGATGGCAACGTATATGAAGACCTTTTTAGATGGGCTCAGAGATCAGTCTTAAATAAGGAACAGGTTCAGCCAGGCTACTACAAATACCTGCGGCCATTAATGAACAGCAACAAATCCAAGCTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1N0	Peroxisomal acyl-coenzyme A oxidase 1 OS=Cavia porcellus OX=10141 GN=ACOX1 PE=2 SV=1
Q8HYL8	Peroxisomal acyl-coenzyme A oxidase 1 OS=Phascolarctos cinereus OX=38626 GN=ACOX1 PE=1 SV=2
Q5RC19	Peroxisomal acyl-coenzyme A oxidase 1 OS=Pongo abelii OX=9601 GN=ACOX1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004607 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14749 all species →	Acyl-CoA_ox_N	Acyl-coenzyme A oxidase N-terminal	Domain	Interproscan
PF01756 all species →	ACOX	Acyl-CoA oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012258 all species →	Family	Acyl-CoA oxidase	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR029320 all species →	Domain	Acyl-coenzyme A oxidase, N-terminal	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR002655 all species →	Domain	Acyl-CoA oxidase, C-terminal	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10909 all species →	ELECTRON TRANSPORT OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003997 all species →	Molecular Function	acyl-CoA oxidase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005504 all species →	Molecular Function	fatty acid binding	Interproscan
GO:0033540 all species →	Biological Process	fatty acid beta-oxidation using acyl-CoA oxidase	Interproscan
GO:0055088 all species →	Biological Process	lipid homeostasis	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap9.1248.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.